Raphanus sativus (raphanus_sativus)
Imported from atlas release summary for Raphanus sativus.
1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1922
Candidate Genes
BAHD
6.76%
C4H
6.48%
C3'H/CYP98A
6.23%
CYP76
4.36%
POD
4.09%
IFS
3.96%
UGT
3.47%
4CL
3.43%
Other Families
61.22%
More Families (97)
T3O
152
3.22%
UFGT
151
3.2%
7DLGT
143
3.03%
DWF4/CYP90B1
138
2.92%
F3H
125
2.65%
NMT
107
2.27%
F3'H/CYP75B
104
2.2%
BR6OX2/CYP85A2
102
2.16%
CODM/T6ODM
84
1.78%
SMT1/SMT2/SMT3
79
1.67%
CYP71
76
1.61%
SGD
73
1.55%
STR
69
1.46%
CSE
64
1.36%
H6H
58
1.23%
TRI/TRII
57
1.21%
T16H
49
1.04%
COMT
48
1.02%
CAD
46
0.97%
PYKS
45
0.95%
SLS
44
0.93%
TPS
42
0.89%
CAS
40
0.85%
BBE
39
0.83%
G8O/G8H
39
0.83%
IFR
39
0.83%
GES
37
0.78%
LAC
37
0.78%
F5H/CYP84A
36
0.76%
16OMT
34
0.72%
IO
33
0.7%
ANR
31
0.66%
TAT
31
0.66%
RAS
30
0.64%
FNS
29
0.61%
LAMT
27
0.57%
CCR
27
0.57%
HCT
26
0.55%
F3'5'H/CYP75A
25
0.53%
CYP90D1
25
0.53%
8HGO
22
0.47%
GS
21
0.44%
PAL
21
0.44%
FPPS
21
0.44%
ANS/LDOX
19
0.4%
CPD/CYP90A1
19
0.4%
BR6OX1/CYP85A1
17
0.36%
CYP51G1
17
0.36%
7DLH
15
0.32%
CPR
15
0.32%
GGPPS
14
0.3%
COR
12
0.25%
NCS
12
0.25%
SQE
12
0.25%
AACT
12
0.25%
CHS
11
0.23%
CYP80B1
10
0.21%
CCoAOMT
10
0.21%
DFR
9
0.19%
MPO
8
0.17%
ROT3/CYP90C1
8
0.17%
SQS/FDFT1
8
0.17%
MVD
8
0.17%
CNMT
7
0.15%
PMT
7
0.15%
ISY
7
0.15%
CYP719
7
0.15%
CYP80F1
7
0.15%
HMGR
7
0.15%
HPPR
6
0.13%
SMO1/SMO2
6
0.13%
TYDC_DDC
5
0.11%
FLS
5
0.11%
CHI
5
0.11%
IDI
5
0.11%
DXS
5
0.11%
ADC
4
0.08%
MCT/IspD
4
0.08%
MVK
4
0.08%
HMGS
4
0.08%
DXR
4
0.08%
XMT_MXMT_DXMT
3
0.06%
TDC
3
0.06%
HYD1
3
0.06%
DET2
3
0.06%
DWF7
3
0.06%
CPI1
2
0.04%
DWF5
2
0.04%
HDR/IspH
2
0.04%
MDS/IspF
2
0.04%
ODC
1
0.02%
DWF1
1
0.02%
FK
1
0.02%
CMK/IspE
1
0.02%
GPPS
1
0.02%
HDS/IspG
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 609 | 20 | BAHD (266) | View species results |
| Phenylpropanoid pathway | 426 | 11 | POD (182) | View species results |
| Alkaloid pathway | 406 | 20 | 7DLGT (73) | View species results |
| Flavonoid pathway | 216 | 12 | UFGT (141) | View species results |
| Rosmarinic acid pathway | 156 | 7 | C4H (66) | View species results |
| Steroid pathway | 109 | 12 | SMT1/SMT2/SMT3 (47) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1916 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 375 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Rsat01G0004800 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rsat01G0004810 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rsat01G0007520 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat01G0007530 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat01G0007690 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat01G0023740 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rsat01G0040890 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat01G0057810 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat02G0009120 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat02G0018580 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat02G0019280 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rsat02G0019290 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rsat02G0024400 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat02G0024410 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat02G0046880 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat02G0048100 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rsat02G0048130 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Rsat03G0009460 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat03G0018400 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat03G0021640 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rsat03G0021650 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rsat03G0021810 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat03G0024880 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat03G0026550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat04G0006440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat04G0019800 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat04G0022830 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat04G0033340 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat04G0041780 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat04G0042160 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rsat04G0043510 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat04G0048000 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat04G0048450 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat04G0048490 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat04G0058790 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat04G0058800 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat04G0058810 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat04G0058820 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat04G0059570 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rsat04G0062430 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rsat04G0062440 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rsat05G0017250 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat05G0018230 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat05G0024280 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rsat05G0025850 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat05G0035360 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat05G0042760 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat05G0046640 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat06G0001270 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rsat06G0001280 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |