PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status Best Target
Rsat01G0016410 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat01G0021420 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat01G0021430 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat01G0022160 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat01G0029550 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat01G0039200 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat01G0055700 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat02G0000580 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat02G0001830 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat02G0003220 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat02G0012300 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat02G0017910 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat02G0020180 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Rsat02G0031530 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat02G0035730 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat02G0037780 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat02G0037790 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat02G0050100 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Rsat03G0009590 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat03G0009610 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat03G0024700 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Rsat03G0028190 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat04G0012270 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat04G0026140 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat04G0029450 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat04G0038300 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat04G0049840 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Rsat04G0049850 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Rsat04G0055030 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Rsat04G0058170 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat04G0058750 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Rsat04G0060330 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Rsat05G0010200 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat05G0020390 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Rsat05G0025980 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat05G0036530 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat05G0044210 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat05G0044220 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat06G0001720 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Rsat06G0006500 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat06G0006810 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat06G0012110 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat06G0012120 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat06G0012650 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat06G0012660 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat06G0029990 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat07G0005090 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat07G0010400 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Rsat07G0019200 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rsat07G0026540 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH