PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 8HGO
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Gene Pathway Family Confidence Status
Rsat01G0005690 Alkaloid 8HGO low borderline
Rsat01G0016570 Alkaloid 8HGO medium borderline
Rsat01G0026010 Alkaloid 8HGO low borderline
Rsat01G0041640 Alkaloid 8HGO medium pass
Rsat01G0047130 Alkaloid 8HGO medium borderline
Rsat02G0013420 Alkaloid 8HGO medium borderline
Rsat03G0020810 Alkaloid 8HGO low borderline
Rsat04G0026710 Alkaloid 8HGO medium borderline
Rsat04G0058420 Alkaloid 8HGO low borderline
Rsat05G0024960 Alkaloid 8HGO low borderline
Rsat05G0034570 Alkaloid 8HGO medium borderline
Rsat06G0016710 Alkaloid 8HGO medium borderline
Rsat06G0018550 Alkaloid 8HGO low borderline
Rsat07G0004270 Alkaloid 8HGO low borderline
Rsat07G0010460 Alkaloid 8HGO medium borderline
Rsat07G0016760 Alkaloid 8HGO medium borderline
Rsat08G0011180 Alkaloid 8HGO low borderline
Rsat08G0018130 Alkaloid 8HGO low borderline
Rsat08G0024070 Alkaloid 8HGO medium borderline
Rsat09G0004970 Alkaloid 8HGO medium borderline
Rsat09G0039330 Alkaloid 8HGO medium borderline
RsatScaffold35070011140 Alkaloid 8HGO low borderline