PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BBE
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Gene Pathway Family Confidence Status Best Target
Rsat01G0009100 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Rsat01G0038400 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Rsat01G0038440 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Rsat02G0014480 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Rsat02G0014670 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Rsat02G0014690 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Rsat02G0014700 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Rsat02G0014710 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Rsat02G0014720 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Rsat02G0014730 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Rsat02G0014740 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Rsat03G0017570 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Rsat04G0010140 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Rsat04G0010150 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Rsat04G0027560 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Rsat04G0027570 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Rsat04G0027610 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Rsat04G0028270 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Rsat04G0046830 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Rsat05G0016310 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Rsat05G0035560 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Rsat05G0035570 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Rsat05G0035580 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Rsat06G0011480 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Rsat06G0011490 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Rsat06G0011510 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Rsat06G0011520 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Rsat06G0011540 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Rsat06G0011550 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Rsat06G0014580 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Rsat06G0014590 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Rsat06G0031340 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Rsat07G0001070 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Rsat08G0013320 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Rsat08G0023110 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Rsat09G0005220 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Rsat09G0005230 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Rsat09G0005240 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
RsatScaffold3570011330 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH