PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Rsat07G0031010 Alkaloid LAMT medium borderline
Rsat08G0018770 Alkaloid LAMT medium borderline
Rsat09G0018520 Alkaloid LAMT medium borderline
Rsat09G0024900 Alkaloid LAMT low borderline
Rsat09G0030330 Alkaloid LAMT medium borderline
Rsat09G0039290 Alkaloid LAMT medium borderline
Rsat01G0007820 Alkaloid MPO low borderline
Rsat01G0019530 Alkaloid MPO medium pass
Rsat02G0018710 Alkaloid MPO medium pass
Rsat02G0041630 Alkaloid MPO medium pass
Rsat03G0022070 Alkaloid MPO high pass
Rsat04G0052120 Alkaloid MPO high pass
Rsat08G0009900 Alkaloid MPO medium pass
Rsat08G0009910 Alkaloid MPO high pass
Rsat02G0017460 Alkaloid NCS medium borderline
Rsat02G0030320 Alkaloid NCS medium borderline
Rsat02G0038910 Alkaloid NCS medium borderline
Rsat04G0009960 Alkaloid NCS medium borderline
Rsat05G0027980 Alkaloid NCS medium borderline
Rsat05G0033850 Alkaloid NCS medium borderline
Rsat06G0024390 Alkaloid NCS medium borderline
Rsat08G0013530 Alkaloid NCS medium borderline
Rsat08G0032620 Alkaloid NCS medium borderline
Rsat09G0001680 Alkaloid NCS medium borderline
Rsat09G0033310 Alkaloid NCS medium borderline
RsatScaffold3570011290 Alkaloid NCS medium borderline
Rsat01G0002950 Alkaloid NMT medium pass
Rsat01G0008870 Alkaloid NMT medium pass
Rsat01G0010220 Alkaloid NMT medium pass
Rsat01G0013710 Alkaloid NMT low borderline
Rsat01G0017890 Alkaloid NMT medium pass
Rsat01G0026210 Alkaloid NMT medium pass
Rsat01G0026640 Alkaloid NMT medium pass
Rsat01G0034860 Alkaloid NMT low borderline
Rsat01G0036480 Alkaloid NMT medium pass
Rsat01G0038180 Alkaloid NMT medium pass
Rsat01G0039610 Alkaloid NMT medium pass
Rsat01G0040080 Alkaloid NMT medium pass
Rsat01G0040120 Alkaloid NMT medium pass
Rsat01G0040130 Alkaloid NMT medium pass
Rsat01G0040140 Alkaloid NMT medium pass
Rsat01G0047300 Alkaloid NMT medium pass
Rsat01G0065290 Alkaloid NMT low borderline
Rsat02G0002710 Alkaloid NMT medium pass
Rsat02G0006460 Alkaloid NMT medium pass
Rsat02G0017380 Alkaloid NMT low borderline
Rsat02G0017610 Alkaloid NMT low borderline
Rsat02G0018280 Alkaloid NMT medium borderline
Rsat02G0018290 Alkaloid NMT medium borderline
Rsat02G0018600 Alkaloid NMT medium pass