Raphanus sativus (raphanus_sativus)
Imported from atlas release summary for Raphanus sativus.
2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4722
Family-Level Calls
BAHD
6.76%
C4H
6.48%
C3'H/CYP98A
6.23%
CYP76
4.36%
POD
4.09%
IFS
3.96%
UGT
3.47%
4CL
3.43%
Other Families
61.22%
More Families (97)
T3O
152
3.22%
UFGT
151
3.2%
7DLGT
143
3.03%
DWF4/CYP90B1
138
2.92%
F3H
125
2.65%
NMT
107
2.27%
F3'H/CYP75B
104
2.2%
BR6OX2/CYP85A2
102
2.16%
CODM/T6ODM
84
1.78%
SMT1/SMT2/SMT3
79
1.67%
CYP71
76
1.61%
SGD
73
1.55%
STR
69
1.46%
CSE
64
1.36%
H6H
58
1.23%
TRI/TRII
57
1.21%
T16H
49
1.04%
COMT
48
1.02%
CAD
46
0.97%
PYKS
45
0.95%
SLS
44
0.93%
TPS
42
0.89%
CAS
40
0.85%
BBE
39
0.83%
G8O/G8H
39
0.83%
IFR
39
0.83%
GES
37
0.78%
LAC
37
0.78%
F5H/CYP84A
36
0.76%
16OMT
34
0.72%
IO
33
0.7%
ANR
31
0.66%
TAT
31
0.66%
RAS
30
0.64%
FNS
29
0.61%
LAMT
27
0.57%
CCR
27
0.57%
HCT
26
0.55%
F3'5'H/CYP75A
25
0.53%
CYP90D1
25
0.53%
8HGO
22
0.47%
GS
21
0.44%
PAL
21
0.44%
FPPS
21
0.44%
ANS/LDOX
19
0.4%
CPD/CYP90A1
19
0.4%
BR6OX1/CYP85A1
17
0.36%
CYP51G1
17
0.36%
7DLH
15
0.32%
CPR
15
0.32%
GGPPS
14
0.3%
COR
12
0.25%
NCS
12
0.25%
SQE
12
0.25%
AACT
12
0.25%
CHS
11
0.23%
CYP80B1
10
0.21%
CCoAOMT
10
0.21%
DFR
9
0.19%
MPO
8
0.17%
ROT3/CYP90C1
8
0.17%
SQS/FDFT1
8
0.17%
MVD
8
0.17%
CNMT
7
0.15%
PMT
7
0.15%
ISY
7
0.15%
CYP719
7
0.15%
CYP80F1
7
0.15%
HMGR
7
0.15%
HPPR
6
0.13%
SMO1/SMO2
6
0.13%
TYDC_DDC
5
0.11%
FLS
5
0.11%
CHI
5
0.11%
IDI
5
0.11%
DXS
5
0.11%
ADC
4
0.08%
MCT/IspD
4
0.08%
MVK
4
0.08%
HMGS
4
0.08%
DXR
4
0.08%
XMT_MXMT_DXMT
3
0.06%
TDC
3
0.06%
HYD1
3
0.06%
DET2
3
0.06%
DWF7
3
0.06%
CPI1
2
0.04%
DWF5
2
0.04%
HDR/IspH
2
0.04%
MDS/IspF
2
0.04%
ODC
1
0.02%
DWF1
1
0.02%
FK
1
0.02%
CMK/IspE
1
0.02%
GPPS
1
0.02%
HDS/IspG
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 609 | 20 | BAHD (266) | View species results |
| Phenylpropanoid pathway | 426 | 11 | POD (182) | View species results |
| Alkaloid pathway | 406 | 20 | 7DLGT (73) | View species results |
| Flavonoid pathway | 216 | 12 | UFGT (141) | View species results |
| Rosmarinic acid pathway | 156 | 7 | C4H (66) | View species results |
| Steroid pathway | 109 | 12 | SMT1/SMT2/SMT3 (47) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1916 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 375 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Rsat01G0056000 | Alkaloid | SGD | medium | pass |
| Rsat01G0056590 | Alkaloid | SGD | medium | pass |
| Rsat01G0056600 | Alkaloid | SGD | medium | pass |
| Rsat01G0061780 | Alkaloid | SGD | medium | pass |
| Rsat01G0061800 | Alkaloid | SGD | medium | pass |
| Rsat01G0062850 | Alkaloid | SGD | low | borderline |
| Rsat01G0064340 | Alkaloid | SGD | medium | pass |
| Rsat02G0013680 | Alkaloid | SGD | medium | pass |
| Rsat02G0041740 | Alkaloid | SGD | medium | pass |
| Rsat02G0044700 | Alkaloid | SGD | medium | pass |
| Rsat02G0044710 | Alkaloid | SGD | medium | pass |
| Rsat02G0049280 | Alkaloid | SGD | medium | pass |
| Rsat03G0010560 | Alkaloid | SGD | medium | pass |
| Rsat03G0022920 | Alkaloid | SGD | medium | pass |
| Rsat03G0024760 | Alkaloid | SGD | medium | pass |
| Rsat03G0029520 | Alkaloid | SGD | medium | pass |
| Rsat04G0009700 | Alkaloid | SGD | low | borderline |
| Rsat04G0022640 | Alkaloid | SGD | medium | pass |
| Rsat04G0033440 | Alkaloid | SGD | medium | pass |
| Rsat04G0043330 | Alkaloid | SGD | medium | pass |
| Rsat04G0045580 | Alkaloid | SGD | medium | pass |
| Rsat04G0053350 | Alkaloid | SGD | medium | pass |
| Rsat04G0053380 | Alkaloid | SGD | medium | pass |
| Rsat04G0053390 | Alkaloid | SGD | medium | pass |
| Rsat04G0059850 | Alkaloid | SGD | medium | pass |
| Rsat04G0059860 | Alkaloid | SGD | medium | pass |
| Rsat04G0059870 | Alkaloid | SGD | medium | pass |
| Rsat04G0060400 | Alkaloid | SGD | medium | pass |
| Rsat04G0060410 | Alkaloid | SGD | medium | pass |
| Rsat05G0006110 | Alkaloid | SGD | low | borderline |
| Rsat05G0015990 | Alkaloid | SGD | medium | pass |
| Rsat05G0017740 | Alkaloid | SGD | medium | pass |
| Rsat05G0018240 | Alkaloid | SGD | medium | pass |
| Rsat05G0018250 | Alkaloid | SGD | medium | pass |
| Rsat05G0018500 | Alkaloid | SGD | medium | pass |
| Rsat05G0020440 | Alkaloid | SGD | medium | pass |
| Rsat05G0022320 | Alkaloid | SGD | medium | pass |
| Rsat05G0022330 | Alkaloid | SGD | medium | pass |
| Rsat05G0022340 | Alkaloid | SGD | medium | pass |
| Rsat05G0040610 | Alkaloid | SGD | medium | pass |
| Rsat05G0052200 | Alkaloid | SGD | medium | pass |
| Rsat05G0052210 | Alkaloid | SGD | low | borderline |
| Rsat05G0053770 | Alkaloid | SGD | low | borderline |
| Rsat06G0001940 | Alkaloid | SGD | medium | pass |
| Rsat06G0014660 | Alkaloid | SGD | medium | pass |
| Rsat06G0024690 | Alkaloid | SGD | medium | pass |
| Rsat07G0016060 | Alkaloid | SGD | medium | pass |
| Rsat08G0010590 | Alkaloid | SGD | medium | pass |
| Rsat08G0010630 | Alkaloid | SGD | medium | pass |
| Rsat08G0010740 | Alkaloid | SGD | medium | pass |