PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Rsat01G0047350 Steroid SQE medium pass
Rsat01G0047360 Steroid SQE low borderline
Rsat01G0047370 Steroid SQE medium pass
Rsat02G0001480 Steroid SQE medium pass
Rsat04G0015880 Steroid SQE medium pass
Rsat04G0015890 Steroid SQE medium pass
Rsat04G0015900 Steroid SQE medium pass
Rsat04G0039210 Steroid SQE medium pass
Rsat08G0010980 Steroid SQE low borderline
Rsat09G0003270 Steroid SQE medium pass
Rsat09G0011460 Steroid SQE medium pass
Rsat02G0003830 Steroid SQS/FDFT1 high pass
Rsat02G0003840 Steroid SQS/FDFT1 high pass
Rsat02G0019500 Steroid SQS/FDFT1 medium pass
Rsat03G0006720 Steroid SQS/FDFT1 low borderline
Rsat04G0002650 Steroid SQS/FDFT1 high pass
Rsat07G0028820 Steroid SQS/FDFT1 medium pass
Rsat08G0014200 Steroid SQS/FDFT1 high pass
Rsat09G0013190 Steroid SQS/FDFT1 low borderline
Rsat01G0010340 Terpenoid AACT medium borderline
Rsat01G0021820 Terpenoid AACT medium pass
Rsat01G0040560 Terpenoid AACT medium pass
Rsat01G0045210 Terpenoid AACT medium borderline
Rsat01G0056100 Terpenoid AACT low borderline
Rsat04G0019500 Terpenoid AACT medium borderline
Rsat04G0045710 Terpenoid AACT medium borderline
Rsat05G0015900 Terpenoid AACT low borderline
Rsat07G0018430 Terpenoid AACT medium pass
Rsat08G0010090 Terpenoid AACT medium pass
Rsat09G0006850 Terpenoid AACT medium borderline
Rsat09G0009280 Terpenoid AACT medium borderline
Rsat01G0002080 Terpenoid BAHD medium pass
Rsat01G0005350 Terpenoid BAHD medium pass
Rsat01G0005620 Terpenoid BAHD medium pass
Rsat01G0006200 Terpenoid BAHD medium pass
Rsat01G0006900 Terpenoid BAHD medium pass
Rsat01G0010020 Terpenoid BAHD low borderline
Rsat01G0015080 Terpenoid BAHD medium pass
Rsat01G0015090 Terpenoid BAHD medium pass
Rsat01G0015250 Terpenoid BAHD medium pass
Rsat01G0015260 Terpenoid BAHD medium pass
Rsat01G0015270 Terpenoid BAHD medium pass
Rsat01G0017300 Terpenoid BAHD medium pass
Rsat01G0017360 Terpenoid BAHD medium pass
Rsat01G0018710 Terpenoid BAHD medium pass
Rsat01G0019670 Terpenoid BAHD low borderline
Rsat01G0020660 Terpenoid BAHD medium pass
Rsat01G0021640 Terpenoid BAHD medium pass
Rsat01G0021700 Terpenoid BAHD medium pass
Rsat01G0022050 Terpenoid BAHD medium pass