PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Rsat03G0010450 Terpenoid FPPS medium pass
Rsat03G0010460 Terpenoid FPPS medium pass
Rsat03G0025020 Terpenoid FPPS medium pass
Rsat04G0024820 Terpenoid FPPS medium pass
Rsat04G0024830 Terpenoid FPPS medium pass
Rsat04G0037700 Terpenoid FPPS medium pass
Rsat04G0048310 Terpenoid FPPS medium pass
Rsat05G0000920 Terpenoid FPPS low borderline
Rsat05G0014180 Terpenoid FPPS medium pass
Rsat07G0019270 Terpenoid FPPS medium pass
Rsat07G0019280 Terpenoid FPPS medium pass
Rsat09G0033400 Terpenoid FPPS medium pass
Rsat09G0033410 Terpenoid FPPS medium pass
Rsat01G0009250 Terpenoid GGPPS medium borderline
Rsat01G0017940 Terpenoid GGPPS medium borderline
Rsat01G0035480 Terpenoid GGPPS medium borderline
Rsat01G0039620 Terpenoid GGPPS low borderline
Rsat01G0058880 Terpenoid GGPPS medium borderline
Rsat02G0000430 Terpenoid GGPPS medium borderline
Rsat02G0002140 Terpenoid GGPPS medium borderline
Rsat03G0017440 Terpenoid GGPPS medium borderline
Rsat05G0007930 Terpenoid GGPPS medium borderline
Rsat05G0043890 Terpenoid GGPPS medium borderline
Rsat05G0048010 Terpenoid GGPPS medium borderline
Rsat06G0020710 Terpenoid GGPPS medium borderline
Rsat08G0018980 Terpenoid GGPPS medium borderline
Rsat09G0040230 Terpenoid GGPPS medium borderline
Rsat04G0046760 Terpenoid GPPS medium borderline
Rsat02G0004110 Terpenoid HDR/IspH high pass
Rsat08G0014350 Terpenoid HDR/IspH high pass
Rsat07G0019360 Terpenoid HDS/IspG high pass
Rsat01G0034230 Terpenoid HMGR medium pass
Rsat02G0049540 Terpenoid HMGR medium pass
Rsat04G0026660 Terpenoid HMGR low borderline
Rsat07G0017300 Terpenoid HMGR medium pass
Rsat07G0017310 Terpenoid HMGR medium pass
Rsat09G0028300 Terpenoid HMGR low borderline
RsatScaffold30150008980 Terpenoid HMGR low borderline
Rsat02G0030470 Terpenoid HMGS low borderline
Rsat02G0038270 Terpenoid HMGS high pass
Rsat04G0033300 Terpenoid HMGS medium pass
Rsat09G0023080 Terpenoid HMGS high pass
Rsat01G0064800 Terpenoid IDI medium pass
Rsat03G0006510 Terpenoid IDI medium pass
Rsat04G0037860 Terpenoid IDI low borderline
Rsat05G0000790 Terpenoid IDI medium pass
Rsat05G0056620 Terpenoid IDI medium pass
Rsat01G0008970 Terpenoid MCT/IspD low borderline
Rsat01G0041750 Terpenoid MCT/IspD high pass
Rsat06G0011200 Terpenoid MCT/IspD low borderline