PlantSME Plant secondary metabolism enzyme database

Trifolium medium (trifolium_medium)

Imported from atlas release summary for Trifolium medium.

1627
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (92)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 17 UGT (175) View species results
Phenylpropanoid pathway 363 12 POD (147) View species results
Alkaloid pathway 359 22 NMT (90) View species results
Flavonoid pathway 207 14 UFGT (52) View species results
Rosmarinic acid pathway 142 7 4CL (51) View species results
Steroid pathway 95 10 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 201 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
MCH79658.1[Trifolium Alkaloid 16OMT medium borderline
MCH81197.1[Trifolium Alkaloid 16OMT medium borderline
MCH85043.1[Trifolium Alkaloid 16OMT medium borderline
MCH99689.1[Trifolium Alkaloid 16OMT medium borderline
MCI00313.1[Trifolium Alkaloid 16OMT medium borderline
MCI07631.1[Trifolium Alkaloid 16OMT medium borderline
MCI07788.1[Trifolium Alkaloid 16OMT medium borderline
MCI08226.1[Trifolium Alkaloid 16OMT medium borderline
MCI08783.1[Trifolium Alkaloid 16OMT medium borderline
MCI12799.1[Trifolium Alkaloid 16OMT medium borderline
MCI18344.1[Trifolium Alkaloid 16OMT medium borderline
MCI18764.1[Trifolium Alkaloid 16OMT low borderline
MCI18794.1[Trifolium Alkaloid 16OMT medium borderline
MCI19890.1[Trifolium Alkaloid 16OMT medium borderline
MCI19960.1[Trifolium Alkaloid 16OMT medium borderline
MCI20107.1[Trifolium Alkaloid 16OMT medium borderline
MCI26642.1[Trifolium Alkaloid 16OMT low borderline
MCI28401.1[Trifolium Alkaloid 16OMT medium borderline
MCI29193.1[Trifolium Alkaloid 16OMT low borderline
MCI30785.1[Trifolium Alkaloid 16OMT medium borderline
MCI66041.1[Trifolium Alkaloid 16OMT medium borderline
MCI54589.1[Trifolium Alkaloid 6OMT_4OMT_SOMT low borderline
MCH79542.1[Trifolium Alkaloid 7DLGT medium pass
MCH79543.1[Trifolium Alkaloid 7DLGT medium pass
MCH80229.1[Trifolium Alkaloid 7DLGT medium pass
MCH80351.1[Trifolium Alkaloid 7DLGT medium pass
MCH81192.1[Trifolium Alkaloid 7DLGT low borderline
MCH83203.1[Trifolium Alkaloid 7DLGT low borderline
MCH84404.1[Trifolium Alkaloid 7DLGT low borderline
MCH84608.1[Trifolium Alkaloid 7DLGT low borderline
MCH84679.1[Trifolium Alkaloid 7DLGT low borderline
MCH85094.1[Trifolium Alkaloid 7DLGT medium pass
MCH86595.1[Trifolium Alkaloid 7DLGT low borderline
MCH87849.1[Trifolium Alkaloid 7DLGT low borderline
MCH89973.1[Trifolium Alkaloid 7DLGT low borderline
MCH90318.1[Trifolium Alkaloid 7DLGT low borderline
MCH90506.1[Trifolium Alkaloid 7DLGT low borderline
MCH91358.1[Trifolium Alkaloid 7DLGT medium pass
MCH91722.1[Trifolium Alkaloid 7DLGT medium pass
MCH92065.1[Trifolium Alkaloid 7DLGT high pass
MCH93586.1[Trifolium Alkaloid 7DLGT low borderline
MCH94055.1[Trifolium Alkaloid 7DLGT low borderline
MCH94057.1[Trifolium Alkaloid 7DLGT medium pass
MCH94264.1[Trifolium Alkaloid 7DLGT low borderline
MCH95689.1[Trifolium Alkaloid 7DLGT low borderline
MCH96837.1[Trifolium Alkaloid 7DLGT medium pass
MCH98380.1[Trifolium Alkaloid 7DLGT low borderline
MCH98709.1[Trifolium Alkaloid 7DLGT medium pass
MCH99369.1[Trifolium Alkaloid 7DLGT low borderline
MCH99550.1[Trifolium Alkaloid 7DLGT medium pass