PlantSME Plant secondary metabolism enzyme database

Trifolium medium (trifolium_medium)

Imported from atlas release summary for Trifolium medium.

1627
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (92)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 17 UGT (175) View species results
Phenylpropanoid pathway 363 12 POD (147) View species results
Alkaloid pathway 359 22 NMT (90) View species results
Flavonoid pathway 207 14 UFGT (52) View species results
Rosmarinic acid pathway 142 7 4CL (51) View species results
Steroid pathway 95 10 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 201 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
MCH80026.1[Trifolium Alkaloid GS medium pass
MCH83094.1[Trifolium Alkaloid GS high pass
MCH84997.1[Trifolium Alkaloid GS low borderline
MCH85509.1[Trifolium Alkaloid GS high pass
MCH87007.1[Trifolium Alkaloid GS medium pass
MCH90139.1[Trifolium Alkaloid GS high pass
MCH99362.1[Trifolium Alkaloid GS low borderline
MCI01704.1[Trifolium Alkaloid GS medium pass
MCI02341.1[Trifolium Alkaloid GS low borderline
MCI03612.1[Trifolium Alkaloid GS high pass
MCI03900.1[Trifolium Alkaloid GS medium pass
MCI03919.1[Trifolium Alkaloid GS low borderline
MCI04061.1[Trifolium Alkaloid GS low borderline
MCI04892.1[Trifolium Alkaloid GS low borderline
MCI06934.1[Trifolium Alkaloid GS medium pass
MCI07287.1[Trifolium Alkaloid GS medium pass
MCI07390.1[Trifolium Alkaloid GS low borderline
MCI08710.1[Trifolium Alkaloid GS low borderline
MCI10082.1[Trifolium Alkaloid GS medium pass
MCI10148.1[Trifolium Alkaloid GS high pass
MCI12072.1[Trifolium Alkaloid GS medium pass
MCI12939.1[Trifolium Alkaloid GS medium pass
MCI13077.1[Trifolium Alkaloid GS high pass
MCI15270.1[Trifolium Alkaloid GS low borderline
MCI16140.1[Trifolium Alkaloid GS medium pass
MCI17672.1[Trifolium Alkaloid GS low borderline
MCI18767.1[Trifolium Alkaloid GS low borderline
MCI30134.1[Trifolium Alkaloid GS medium pass
MCI34991.1[Trifolium Alkaloid GS low borderline
MCI42462.1[Trifolium Alkaloid GS medium pass
MCI77870.1[Trifolium Alkaloid GS medium pass
MCI83212.1[Trifolium Alkaloid GS low borderline
MCI83336.1[Trifolium Alkaloid GS low borderline