PlantSME Plant secondary metabolism enzyme database

Trifolium medium (trifolium_medium)

Imported from atlas release summary for Trifolium medium.

1627
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (92)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 17 UGT (175) View species results
Phenylpropanoid pathway 363 12 POD (147) View species results
Alkaloid pathway 359 22 NMT (90) View species results
Flavonoid pathway 207 14 UFGT (52) View species results
Rosmarinic acid pathway 142 7 4CL (51) View species results
Steroid pathway 95 10 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 201 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
MCH79445.1[Trifolium Alkaloid PYKS high pass
MCH79604.1[Trifolium Alkaloid PYKS medium pass
MCH80020.1[Trifolium Alkaloid PYKS low borderline
MCH80021.1[Trifolium Alkaloid PYKS high pass
MCH80036.1[Trifolium Alkaloid PYKS medium pass
MCH80482.1[Trifolium Alkaloid PYKS medium pass
MCH80911.1[Trifolium Alkaloid PYKS medium pass
MCH81017.1[Trifolium Alkaloid PYKS low borderline
MCH81479.1[Trifolium Alkaloid PYKS medium pass
MCH85108.1[Trifolium Alkaloid PYKS high pass
MCH85113.1[Trifolium Alkaloid PYKS low borderline
MCH85343.1[Trifolium Alkaloid PYKS low borderline
MCH85479.1[Trifolium Alkaloid PYKS low borderline
MCH85620.1[Trifolium Alkaloid PYKS medium pass
MCH85658.1[Trifolium Alkaloid PYKS low borderline
MCH87501.1[Trifolium Alkaloid PYKS high pass
MCH89602.1[Trifolium Alkaloid PYKS medium pass
MCH92293.1[Trifolium Alkaloid PYKS low borderline
MCH93080.1[Trifolium Alkaloid PYKS medium pass
MCH96652.1[Trifolium Alkaloid PYKS medium pass
MCH97491.1[Trifolium Alkaloid PYKS low borderline
MCI01874.1[Trifolium Alkaloid PYKS high pass
MCI06315.1[Trifolium Alkaloid PYKS high pass
MCI06325.1[Trifolium Alkaloid PYKS medium pass
MCI14552.1[Trifolium Alkaloid PYKS medium pass
MCI15011.1[Trifolium Alkaloid PYKS low borderline
MCI16881.1[Trifolium Alkaloid PYKS medium pass
MCI28497.1[Trifolium Alkaloid PYKS medium pass
MCI30702.1[Trifolium Alkaloid PYKS medium pass
MCI44078.1[Trifolium Alkaloid PYKS medium pass
MCI45608.1[Trifolium Alkaloid PYKS high pass
MCI46366.1[Trifolium Alkaloid PYKS high pass
MCI51194.1[Trifolium Alkaloid PYKS medium pass
MCI58717.1[Trifolium Alkaloid PYKS medium pass
MCI72933.1[Trifolium Alkaloid PYKS medium pass
MCI73828.1[Trifolium Alkaloid PYKS medium pass
MCI74479.1[Trifolium Alkaloid PYKS medium pass
MCI77583.1[Trifolium Alkaloid PYKS medium pass