Trifolium medium (trifolium_medium)
Imported from atlas release summary for Trifolium medium.
1627
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1627
Candidate Genes
UGT
5.88%
BAHD
5.5%
4CL
5.47%
C4H
5.08%
POD
4.92%
C3'H/CYP98A
4.19%
NMT
3.61%
IFS
3.42%
Other Families
61.94%
More Families (92)
7DLGT
94
3.0%
CYP76
88
2.81%
UFGT
80
2.56%
F3H
74
2.36%
PAL
63
2.01%
STR
62
1.98%
T3O
57
1.82%
H6H
51
1.63%
F3'H/CYP75B
50
1.6%
CAS
50
1.6%
CODM/T6ODM
49
1.57%
T16H
45
1.44%
BR6OX2/CYP85A2
45
1.44%
CAD
42
1.34%
PYKS
38
1.21%
DWF4/CYP90B1
38
1.21%
CSE
36
1.15%
GS
33
1.05%
CHS
33
1.05%
COMT
32
1.02%
G8O/G8H
30
0.96%
SGD
28
0.89%
IFR
28
0.89%
LAC
28
0.89%
CYP51G1
27
0.86%
SMT1/SMT2/SMT3
26
0.83%
CYP71
26
0.83%
ANS/LDOX
25
0.8%
CYP90D1
24
0.77%
7DLH
23
0.74%
TRI/TRII
22
0.7%
TPS
22
0.7%
16OMT
21
0.67%
DFR
21
0.67%
BBE
20
0.64%
IO
20
0.64%
FNS
20
0.64%
BR6OX1/CYP85A1
20
0.64%
F3'5'H/CYP75A
19
0.61%
CCR
19
0.61%
HCT
18
0.58%
CCoAOMT
17
0.54%
CPD/CYP90A1
17
0.54%
DXS
17
0.54%
NCS
15
0.48%
MPO
15
0.48%
ANR
15
0.48%
GES
14
0.45%
COR
14
0.45%
8HGO
13
0.42%
ISY
13
0.42%
TAT
13
0.42%
HMGR
13
0.42%
F5H/CYP84A
12
0.38%
CYP80B1
11
0.35%
RAS
11
0.35%
CPR
11
0.35%
ROT3/CYP90C1
11
0.35%
DXR
11
0.35%
SLS
10
0.32%
FLS
10
0.32%
AACT
10
0.32%
SQE
9
0.29%
FPPS
9
0.29%
PMT
8
0.26%
CYP719
7
0.22%
HPPR
7
0.22%
LAMT
6
0.19%
CHI
6
0.19%
DWF1
6
0.19%
HMGS
6
0.19%
HDS/IspG
6
0.19%
GGPPS
5
0.16%
CNMT
4
0.13%
IDI
4
0.13%
MVK
4
0.13%
ODC
3
0.1%
SMO1/SMO2
3
0.1%
SQS/FDFT1
3
0.1%
CMK/IspE
3
0.1%
XMT_MXMT_DXMT
2
0.06%
TDC
2
0.06%
ADC
2
0.06%
DWF7
2
0.06%
HYD1
2
0.06%
MVD
2
0.06%
GPPS
2
0.06%
6OMT_4OMT_SOMT
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
DWF5
1
0.03%
MCT/IspD
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 461 | 17 | UGT (175) | View species results |
| Phenylpropanoid pathway | 363 | 12 | POD (147) | View species results |
| Alkaloid pathway | 359 | 22 | NMT (90) | View species results |
| Flavonoid pathway | 207 | 14 | UFGT (52) | View species results |
| Rosmarinic acid pathway | 142 | 7 | 4CL (51) | View species results |
| Steroid pathway | 95 | 10 | CAS (48) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 977 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 201 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SMT1/SMT2/SMT3
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| MCH79955.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCH80423.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCH82957.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCH87231.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCH87268.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCH88209.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCH89809.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH |
| MCH92532.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCH93710.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCH94946.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCH97125.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00004__sp_Q4VNK0_SMTA_BRAOT |
| MCH98058.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCH98114.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00002__sp_H2E7T9_SMTL2_BOTBR |
| MCH98453.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCI03257.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCI03552.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCI04403.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00004__sp_Q4VNK0_SMTA_BRAOT |
| MCI10145.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCI14288.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCI20521.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCI22054.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCI22791.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCI27411.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCI30506.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| MCI65753.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00004__sp_Q4VNK0_SMTA_BRAOT |
| MCI70647.1[Trifolium | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |