PlantSME Plant secondary metabolism enzyme database

Trifolium medium (trifolium_medium)

Imported from atlas release summary for Trifolium medium.

1627
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (92)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 17 UGT (175) View species results
Phenylpropanoid pathway 363 12 POD (147) View species results
Alkaloid pathway 359 22 NMT (90) View species results
Flavonoid pathway 207 14 UFGT (52) View species results
Rosmarinic acid pathway 142 7 4CL (51) View species results
Steroid pathway 95 10 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 201 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
MCH88255.1[Trifolium Alkaloid IO medium borderline
MCH89289.1[Trifolium Alkaloid IO low borderline
MCH91894.1[Trifolium Alkaloid IO low borderline
MCH92442.1[Trifolium Alkaloid IO medium borderline
MCH94682.1[Trifolium Alkaloid IO low borderline
MCI03373.1[Trifolium Alkaloid IO low borderline
MCI12629.1[Trifolium Alkaloid IO medium borderline
MCI16229.1[Trifolium Alkaloid IO medium borderline
MCI23005.1[Trifolium Alkaloid IO medium borderline
MCI24403.1[Trifolium Alkaloid IO medium borderline
MCI24448.1[Trifolium Alkaloid IO medium borderline
MCI30171.1[Trifolium Alkaloid IO medium borderline
MCI33019.1[Trifolium Alkaloid IO low borderline
MCI36247.1[Trifolium Alkaloid IO medium borderline
MCI49330.1[Trifolium Alkaloid IO low borderline
MCI56004.1[Trifolium Alkaloid IO medium borderline
MCI57660.1[Trifolium Alkaloid IO medium borderline
MCI58185.1[Trifolium Alkaloid IO medium borderline
MCI66777.1[Trifolium Alkaloid IO low borderline
MCI81995.1[Trifolium Alkaloid IO low borderline