PlantSME Plant secondary metabolism enzyme database

Trifolium medium (trifolium_medium)

Imported from atlas release summary for Trifolium medium.

1627
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (92)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 17 UGT (175) View species results
Phenylpropanoid pathway 363 12 POD (147) View species results
Alkaloid pathway 359 22 NMT (90) View species results
Flavonoid pathway 207 14 UFGT (52) View species results
Rosmarinic acid pathway 142 7 4CL (51) View species results
Steroid pathway 95 10 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 201 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
MCH80325.1[Trifolium Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
MCH83202.1[Trifolium Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
MCH87515.1[Trifolium Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
MCH90823.1[Trifolium Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
MCH93698.1[Trifolium Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
MCH95417.1[Trifolium Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
MCH95599.1[Trifolium Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
MCH97721.1[Trifolium Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
MCH98592.1[Trifolium Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
MCH99618.1[Trifolium Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
MCI00521.1[Trifolium Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
MCI02128.1[Trifolium Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
MCI04003.1[Trifolium Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
MCI07537.1[Trifolium Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
MCI08649.1[Trifolium Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
MCI16900.1[Trifolium Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
MCI17138.1[Trifolium Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
MCI17994.1[Trifolium Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
MCI19139.1[Trifolium Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
MCI19747.1[Trifolium Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
MCI19862.1[Trifolium Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
MCI20341.1[Trifolium Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
MCI25337.1[Trifolium Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
MCI28921.1[Trifolium Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
MCI42268.1[Trifolium Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
MCI55396.1[Trifolium Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
MCI64523.1[Trifolium Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
MCI82659.1[Trifolium Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH