PlantSME Plant secondary metabolism enzyme database

Trifolium medium (trifolium_medium)

Imported from atlas release summary for Trifolium medium.

1627
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.33% Phenylpropanoid pathway 22.31% Alkaloid pathway 22.07% Flavonoid pathway 12.72% Rosmarinic acid pathway 8.73% Steroid pathway 5.84%
Family Distribution
UGT 5.88% BAHD 5.5% 4CL 5.47% C4H 5.08% POD 4.92% C3'H/CYP98A 4.19% NMT 3.61% IFS 3.42%
Other Families 61.94%
More Families (92)
7DLGT 94 3.0% CYP76 88 2.81% UFGT 80 2.56% F3H 74 2.36% PAL 63 2.01% STR 62 1.98% T3O 57 1.82% H6H 51 1.63% F3'H/CYP75B 50 1.6% CAS 50 1.6% CODM/T6ODM 49 1.57% T16H 45 1.44% BR6OX2/CYP85A2 45 1.44% CAD 42 1.34% PYKS 38 1.21% DWF4/CYP90B1 38 1.21% CSE 36 1.15% GS 33 1.05% CHS 33 1.05% COMT 32 1.02% G8O/G8H 30 0.96% SGD 28 0.89% IFR 28 0.89% LAC 28 0.89% CYP51G1 27 0.86% SMT1/SMT2/SMT3 26 0.83% CYP71 26 0.83% ANS/LDOX 25 0.8% CYP90D1 24 0.77% 7DLH 23 0.74% TRI/TRII 22 0.7% TPS 22 0.7% 16OMT 21 0.67% DFR 21 0.67% BBE 20 0.64% IO 20 0.64% FNS 20 0.64% BR6OX1/CYP85A1 20 0.64% F3'5'H/CYP75A 19 0.61% CCR 19 0.61% HCT 18 0.58% CCoAOMT 17 0.54% CPD/CYP90A1 17 0.54% DXS 17 0.54% NCS 15 0.48% MPO 15 0.48% ANR 15 0.48% GES 14 0.45% COR 14 0.45% 8HGO 13 0.42% ISY 13 0.42% TAT 13 0.42% HMGR 13 0.42% F5H/CYP84A 12 0.38% CYP80B1 11 0.35% RAS 11 0.35% CPR 11 0.35% ROT3/CYP90C1 11 0.35% DXR 11 0.35% SLS 10 0.32% FLS 10 0.32% AACT 10 0.32% SQE 9 0.29% FPPS 9 0.29% PMT 8 0.26% CYP719 7 0.22% HPPR 7 0.22% LAMT 6 0.19% CHI 6 0.19% DWF1 6 0.19% HMGS 6 0.19% HDS/IspG 6 0.19% GGPPS 5 0.16% CNMT 4 0.13% IDI 4 0.13% MVK 4 0.13% ODC 3 0.1% SMO1/SMO2 3 0.1% SQS/FDFT1 3 0.1% CMK/IspE 3 0.1% XMT_MXMT_DXMT 2 0.06% TDC 2 0.06% ADC 2 0.06% DWF7 2 0.06% HYD1 2 0.06% MVD 2 0.06% GPPS 2 0.06% 6OMT_4OMT_SOMT 1 0.03% FK 1 0.03% CPI1 1 0.03% DWF5 1 0.03% MCT/IspD 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 17 UGT (175) View species results
Phenylpropanoid pathway 363 12 POD (147) View species results
Alkaloid pathway 359 22 NMT (90) View species results
Flavonoid pathway 207 14 UFGT (52) View species results
Rosmarinic acid pathway 142 7 4CL (51) View species results
Steroid pathway 95 10 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 201 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HMGR
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Gene Pathway Family Confidence Status Best Target
MCH84801.1[Trifolium Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
MCH94283.1[Trifolium Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
MCI22049.1[Trifolium Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
MCI25457.1[Trifolium Terpenoid HMGR medium pass HMGR__00001__sp_A0A0A1C3I2_HMGR1_PANGI
MCI31643.1[Trifolium Terpenoid HMGR low borderline HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
MCI37895.1[Trifolium Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
MCI45460.1[Trifolium Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
MCI50953.1[Trifolium Terpenoid HMGR low borderline HMGR__00001__sp_A0A0A1C3I2_HMGR1_PANGI
MCI55711.1[Trifolium Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
MCI61893.1[Trifolium Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
MCI63735.1[Trifolium Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
MCI83509.1[Trifolium Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
MCI83639.1[Trifolium Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI