PlantSME Plant secondary metabolism enzyme database

Trifolium medium (trifolium_medium)

Imported from atlas release summary for Trifolium medium.

1627
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (92)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 17 UGT (175) View species results
Phenylpropanoid pathway 363 12 POD (147) View species results
Alkaloid pathway 359 22 NMT (90) View species results
Flavonoid pathway 207 14 UFGT (52) View species results
Rosmarinic acid pathway 142 7 4CL (51) View species results
Steroid pathway 95 10 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 201 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HCT
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Gene Pathway Family Confidence Status
MCH79572.1[Trifolium Phenylpropanoid HCT low borderline
MCH82035.1[Trifolium Phenylpropanoid HCT low borderline
MCH91260.1[Trifolium Phenylpropanoid HCT low borderline
MCH94301.1[Trifolium Phenylpropanoid HCT medium pass
MCH96096.1[Trifolium Phenylpropanoid HCT medium pass
MCH96627.1[Trifolium Phenylpropanoid HCT medium pass
MCI02753.1[Trifolium Phenylpropanoid HCT low borderline
MCI04759.1[Trifolium Phenylpropanoid HCT medium pass
MCI05742.1[Trifolium Phenylpropanoid HCT low borderline
MCI13401.1[Trifolium Phenylpropanoid HCT medium pass
MCI19413.1[Trifolium Phenylpropanoid HCT low borderline
MCI21671.1[Trifolium Phenylpropanoid HCT medium pass
MCI23017.1[Trifolium Phenylpropanoid HCT medium pass
MCI32517.1[Trifolium Phenylpropanoid HCT low borderline
MCI32579.1[Trifolium Phenylpropanoid HCT medium pass
MCI44344.1[Trifolium Phenylpropanoid HCT medium pass
MCI49002.1[Trifolium Phenylpropanoid HCT medium pass
MCI92313.1[Trifolium Phenylpropanoid HCT low borderline