PlantSME Plant secondary metabolism enzyme database

Trifolium medium (trifolium_medium)

Imported from atlas release summary for Trifolium medium.

1627
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (92)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 17 UGT (175) View species results
Phenylpropanoid pathway 363 12 POD (147) View species results
Alkaloid pathway 359 22 NMT (90) View species results
Flavonoid pathway 207 14 UFGT (52) View species results
Rosmarinic acid pathway 142 7 4CL (51) View species results
Steroid pathway 95 10 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 201 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status
MCH79846.1[Trifolium Alkaloid G8O/G8H low borderline
MCH85580.1[Trifolium Alkaloid G8O/G8H medium borderline
MCH86374.1[Trifolium Alkaloid G8O/G8H medium borderline
MCH94345.1[Trifolium Alkaloid G8O/G8H medium borderline
MCH97295.1[Trifolium Alkaloid G8O/G8H medium borderline
MCH97679.1[Trifolium Alkaloid G8O/G8H low borderline
MCH98749.1[Trifolium Alkaloid G8O/G8H medium borderline
MCI05445.1[Trifolium Alkaloid G8O/G8H low borderline
MCI09194.1[Trifolium Alkaloid G8O/G8H medium borderline
MCI13009.1[Trifolium Alkaloid G8O/G8H medium borderline
MCI15374.1[Trifolium Alkaloid G8O/G8H low borderline
MCI15960.1[Trifolium Alkaloid G8O/G8H medium borderline
MCI18692.1[Trifolium Alkaloid G8O/G8H medium borderline
MCI19757.1[Trifolium Alkaloid G8O/G8H medium borderline
MCI21414.1[Trifolium Alkaloid G8O/G8H medium borderline
MCI23209.1[Trifolium Alkaloid G8O/G8H medium borderline
MCI23871.1[Trifolium Alkaloid G8O/G8H medium borderline
MCI25155.1[Trifolium Alkaloid G8O/G8H low borderline
MCI29016.1[Trifolium Alkaloid G8O/G8H low borderline
MCI30787.1[Trifolium Alkaloid G8O/G8H medium borderline
MCI30875.1[Trifolium Alkaloid G8O/G8H low borderline
MCI31313.1[Trifolium Alkaloid G8O/G8H medium borderline
MCI46730.1[Trifolium Alkaloid G8O/G8H medium borderline
MCI50644.1[Trifolium Alkaloid G8O/G8H low borderline
MCI58701.1[Trifolium Alkaloid G8O/G8H medium borderline
MCI67740.1[Trifolium Alkaloid G8O/G8H medium pass
MCI67935.1[Trifolium Alkaloid G8O/G8H medium borderline
MCI73280.1[Trifolium Alkaloid G8O/G8H medium borderline
MCI76673.1[Trifolium Alkaloid G8O/G8H medium borderline
MCI88312.1[Trifolium Alkaloid G8O/G8H medium borderline