PlantSME Plant secondary metabolism enzyme database

Trifolium medium (trifolium_medium)

Imported from atlas release summary for Trifolium medium.

1627
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (92)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 17 UGT (175) View species results
Phenylpropanoid pathway 363 12 POD (147) View species results
Alkaloid pathway 359 22 NMT (90) View species results
Flavonoid pathway 207 14 UFGT (52) View species results
Rosmarinic acid pathway 142 7 4CL (51) View species results
Steroid pathway 95 10 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 201 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
MCH81900.1[Trifolium Alkaloid T16H medium borderline
MCH85957.1[Trifolium Alkaloid T16H low borderline
MCH88644.1[Trifolium Alkaloid T16H low borderline
MCH89641.1[Trifolium Alkaloid T16H medium borderline
MCH91203.1[Trifolium Alkaloid T16H low borderline
MCH92120.1[Trifolium Alkaloid T16H medium borderline
MCH92387.1[Trifolium Alkaloid T16H low borderline
MCH93096.1[Trifolium Alkaloid T16H low borderline
MCH93922.1[Trifolium Alkaloid T16H medium pass
MCH94488.1[Trifolium Alkaloid T16H medium borderline
MCH96324.1[Trifolium Alkaloid T16H medium pass
MCH98465.1[Trifolium Alkaloid T16H medium pass
MCI01502.1[Trifolium Alkaloid T16H medium borderline
MCI02088.1[Trifolium Alkaloid T16H medium borderline
MCI02775.1[Trifolium Alkaloid T16H medium borderline
MCI02858.1[Trifolium Alkaloid T16H medium borderline
MCI02881.1[Trifolium Alkaloid T16H medium borderline
MCI04326.1[Trifolium Alkaloid T16H low borderline
MCI05312.1[Trifolium Alkaloid T16H medium borderline
MCI08640.1[Trifolium Alkaloid T16H medium pass
MCI11099.1[Trifolium Alkaloid T16H low borderline
MCI12231.1[Trifolium Alkaloid T16H medium borderline
MCI14302.1[Trifolium Alkaloid T16H medium borderline
MCI14488.1[Trifolium Alkaloid T16H medium borderline
MCI14785.1[Trifolium Alkaloid T16H low borderline
MCI16033.1[Trifolium Alkaloid T16H low borderline
MCI17375.1[Trifolium Alkaloid T16H low borderline
MCI18048.1[Trifolium Alkaloid T16H low borderline
MCI18097.1[Trifolium Alkaloid T16H low borderline
MCI19005.1[Trifolium Alkaloid T16H medium borderline
MCI22248.1[Trifolium Alkaloid T16H medium pass
MCI22328.1[Trifolium Alkaloid T16H low borderline
MCI25835.1[Trifolium Alkaloid T16H medium borderline
MCI26667.1[Trifolium Alkaloid T16H medium borderline
MCI27820.1[Trifolium Alkaloid T16H medium borderline
MCI30778.1[Trifolium Alkaloid T16H low borderline
MCI31819.1[Trifolium Alkaloid T16H low borderline
MCI32211.1[Trifolium Alkaloid T16H medium borderline
MCI33410.1[Trifolium Alkaloid T16H medium borderline
MCI36636.1[Trifolium Alkaloid T16H medium borderline
MCI36764.1[Trifolium Alkaloid T16H medium borderline
MCI37579.1[Trifolium Alkaloid T16H low borderline
MCI55851.1[Trifolium Alkaloid T16H medium borderline
MCI65251.1[Trifolium Alkaloid T16H medium borderline
MCI97498.1[Trifolium Alkaloid T16H low borderline