PlantSME Plant secondary metabolism enzyme database

Trifolium medium (trifolium_medium)

Imported from atlas release summary for Trifolium medium.

1627
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (92)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 17 UGT (175) View species results
Phenylpropanoid pathway 363 12 POD (147) View species results
Alkaloid pathway 359 22 NMT (90) View species results
Flavonoid pathway 207 14 UFGT (52) View species results
Rosmarinic acid pathway 142 7 4CL (51) View species results
Steroid pathway 95 10 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 201 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status Best Target
MCH80248.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCH80674.1[Trifolium Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
MCH80817.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCH83775.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCH83780.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCH83789.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCH88171.1[Trifolium Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
MCH88346.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCH89255.1[Trifolium Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
MCH93284.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCH94018.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCH95586.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCH96173.1[Trifolium Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
MCH97099.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCI00154.1[Trifolium Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
MCI03325.1[Trifolium Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
MCI06604.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCI07269.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCI08181.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCI08519.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCI09536.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCI10980.1[Trifolium Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
MCI11893.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCI13636.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCI15874.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCI16394.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCI18081.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCI30312.1[Trifolium Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
MCI33976.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCI39835.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCI40758.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCI41025.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCI45678.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCI52656.1[Trifolium Phenylpropanoid CSE low borderline CSE__00002__sp_Q9C942_CSE_ARATH
MCI54395.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
MCI77967.1[Trifolium Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL