PlantSME Plant secondary metabolism enzyme database

Gossypium barbadense (gossypium_barbadense)

Imported from atlas release summary for Gossypium barbadense.

4400
Candidate Protein Records
3645
Pathway-Level Records
9305
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1055 21 BAHD (388) View species results
Alkaloid pathway 824 25 7DLGT (140) View species results
Phenylpropanoid pathway 824 12 POD (325) View species results
Flavonoid pathway 411 13 UFGT (256) View species results
Rosmarinic acid pathway 307 7 C4H (123) View species results
Steroid pathway 224 12 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 3759 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 675 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GbarA11G0013540 Terpenoid FPPS medium pass
GbarD01G0007870 Terpenoid FPPS medium borderline
GbarD01G0009160 Terpenoid FPPS medium pass
GbarD03G0000220 Terpenoid FPPS low borderline
GbarD04G0016910 Terpenoid FPPS medium pass
GbarD04G0016920 Terpenoid FPPS low borderline
GbarD05G0018030 Terpenoid FPPS medium pass
GbarD05G0039250 Terpenoid FPPS medium borderline
GbarD09G0010360 Terpenoid FPPS medium pass
GbarD09G0017590 Terpenoid FPPS medium pass
GbarD11G0003980 Terpenoid FPPS medium pass
GbarD11G0013860 Terpenoid FPPS medium pass
Gbarscaffold7288_obj_A130007210 Terpenoid FPPS medium pass
GbarA01G0007790 Terpenoid GGPPS medium borderline
GbarA01G0018340 Terpenoid GGPPS medium borderline
GbarA01G0023430 Terpenoid GGPPS medium borderline
GbarA01G0023440 Terpenoid GGPPS medium borderline
GbarA06G0010280 Terpenoid GGPPS medium pass
GbarA07G0011600 Terpenoid GGPPS medium borderline
GbarA10G0004500 Terpenoid GGPPS medium borderline
GbarA10G0009450 Terpenoid GGPPS medium borderline
GbarA11G0004740 Terpenoid GGPPS medium borderline
GbarA11G0019530 Terpenoid GGPPS medium borderline
GbarA11G0032880 Terpenoid GGPPS medium borderline
GbarA13G0017790 Terpenoid GGPPS medium borderline
GbarA13G0021030 Terpenoid GGPPS low borderline
GbarD01G0019500 Terpenoid GGPPS medium borderline
GbarD01G0024210 Terpenoid GGPPS medium borderline
GbarD01G0024220 Terpenoid GGPPS medium borderline
GbarD07G0011410 Terpenoid GGPPS medium borderline
GbarD09G0008150 Terpenoid GGPPS medium pass
GbarD10G0004750 Terpenoid GGPPS medium borderline
GbarD10G0010140 Terpenoid GGPPS medium borderline
GbarD10G0010150 Terpenoid GGPPS medium borderline
GbarD10G0010160 Terpenoid GGPPS medium borderline
GbarD10G0013120 Terpenoid GGPPS medium borderline
GbarD10G0014460 Terpenoid GGPPS medium borderline
GbarD11G0004960 Terpenoid GGPPS medium borderline
GbarD11G0019840 Terpenoid GGPPS medium borderline
GbarD13G0017320 Terpenoid GGPPS medium borderline
Gbarscaffold2075_obj0001840 Terpenoid GGPPS medium borderline
Gbarscaffold24107_obj0002470 Terpenoid GGPPS medium borderline
GbarA10G0011970 Terpenoid GPPS low borderline
Gbarscaffold67-1_subseq_3489944_3606482_obj_A060006930 Terpenoid GPPS medium pass
GbarA03G0020440 Terpenoid HDR/IspH high pass
GbarA12G0001680 Terpenoid HDR/IspH high pass
GbarA13G0004750 Terpenoid HDR/IspH high pass
GbarD02G0022110 Terpenoid HDR/IspH high pass
GbarD12G0001770 Terpenoid HDR/IspH high pass
GbarD13G0004730 Terpenoid HDR/IspH high pass