PlantSME Plant secondary metabolism enzyme database

Hibiscus hamabo (hibiscus_hamabo)

Imported from atlas release summary for Hibiscus hamabo.

5069
Candidate Protein Records
4039
Pathway-Level Records
10326
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 28.72% Phenylpropanoid pathway 23.94% Alkaloid pathway 20.15% Flavonoid pathway 11.51% Rosmarinic acid pathway 9.21% Steroid pathway 6.46%
Family Distribution
C4H 6.55% C3'H/CYP98A 5.88% BAHD 5.79% CYP76 3.97% POD 3.88% 4CL 3.86% IFS 3.78% T3O 3.62%
Other Families 62.67%
More Families (97)
F3H 371 3.59% UGT 296 2.87% 7DLGT 258 2.5% UFGT 253 2.45% NMT 243 2.35% CODM/T6ODM 226 2.19% DWF4/CYP90B1 214 2.07% F3'H/CYP75B 205 1.99% BR6OX2/CYP85A2 204 1.98% H6H 198 1.92% STR 178 1.72% LAC 173 1.68% CAD 165 1.6% CAS 146 1.41% CYP71 144 1.39% SMT1/SMT2/SMT3 121 1.17% TRI/TRII 110 1.07% CYP90D1 110 1.07% TPS 110 1.07% CSE 101 0.98% HCT 100 0.97% GES 99 0.96% COMT 95 0.92% IFR 93 0.9% PYKS 83 0.8% T16H 83 0.8% IO 82 0.79% RAS 78 0.76% F5H/CYP84A 74 0.72% G8O/G8H 73 0.71% TAT 73 0.71% GS 71 0.69% BBE 70 0.68% ANR 70 0.68% 7DLH 69 0.67% CPD/CYP90A1 67 0.65% PAL 66 0.64% NCS 64 0.62% FNS 64 0.62% PMT 61 0.59% SLS 57 0.55% F3'5'H/CYP75A 57 0.55% 16OMT 55 0.53% ANS/LDOX 50 0.48% BR6OX1/CYP85A1 47 0.46% CCR 46 0.45% SGD 43 0.42% COR 42 0.41% CYP51G1 37 0.36% 8HGO 35 0.34% DFR 35 0.34% SQE 33 0.32% CNMT 31 0.3% CPR 28 0.27% FPPS 27 0.26% CCoAOMT 23 0.22% ROT3/CYP90C1 23 0.22% GGPPS 23 0.22% SMO1/SMO2 22 0.21% MPO 21 0.2% LAMT 21 0.2% DXS 21 0.2% AACT 20 0.19% HMGR 20 0.19% CHS 19 0.18% TYDC_DDC 18 0.17% ISY 17 0.16% CYP719 16 0.15% MVD 16 0.15% CYP80B1 14 0.14% SQS/FDFT1 14 0.14% MVK 14 0.14% HMGS 13 0.13% HPPR 12 0.12% IDI 11 0.11% TDC 10 0.1% CHI 10 0.1% XMT_MXMT_DXMT 8 0.08% ADC 8 0.08% DWF1 8 0.08% FLS 7 0.07% DET2 7 0.07% HDR/IspH 7 0.07% 6OMT_4OMT_SOMT 6 0.06% ODC 6 0.06% MCT/IspD 6 0.06% DXR 6 0.06% MDS/IspF 6 0.06% PMK 6 0.06% HYD1 5 0.05% HDS/IspG 5 0.05% FK 4 0.04% CPI1 4 0.04% DWF7 3 0.03% DWF5 3 0.03% CMK/IspE 3 0.03% GPPS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1160 21 BAHD (466) View species results
Phenylpropanoid pathway 967 13 POD (369) View species results
Alkaloid pathway 814 27 NMT (125) View species results
Flavonoid pathway 465 14 UFGT (231) View species results
Rosmarinic acid pathway 372 7 C4H (135) View species results
Steroid pathway 261 15 CAS (118) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 4033 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 776 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Protein/Isoform Record Pathway Family Confidence Status Best Target
HhamSuperscaffold60933030 Terpenoid TPS low borderline TPS__00143__sp_M4HY05_TPSD1_PINCO
HhamSuperscaffold70972090 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
HhamSuperscaffold70973590 Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
HhamSuperscaffold70974940 Terpenoid TPS medium pass TPS__00117__sp_G8H5M7_TPS9_SOLHA
HhamSuperscaffold70974950 Terpenoid TPS low borderline TPS__00076__sp_D0UZK2_TPS1_CITSI
HhamSuperscaffold70974960 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
HhamSuperscaffold70974970 Terpenoid TPS medium pass TPS__00006__sp_A0A142BX70_TPS1_XANST
HhamSuperscaffold70974980 Terpenoid TPS low borderline TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
HhamSuperscaffold91039180 Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
Hhamunanchor5851068600 Terpenoid TPS medium pass TPS__00128__sp_J7LMP2_TPS5_PHYDL