PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
OBART01G27780.1 Flavonoid C4H low borderline
OBART01G27810.1 Flavonoid C4H medium borderline
OBART01G35270.1 Flavonoid C4H medium borderline
OBART02G14460.1 Flavonoid C4H low borderline
OBART05G11670.1 Flavonoid C4H medium pass
OBART06G17740.1 Flavonoid C4H low borderline
OBART06G19000.2 Flavonoid C4H medium borderline
OBART07G24320.1 Flavonoid C4H low borderline
OBART08G11790.1 Flavonoid C4H low borderline
OBART08G11790.2 Flavonoid C4H low borderline
OBART10G15630.1 Flavonoid C4H medium borderline
OBART10G15650.1 Flavonoid C4H medium borderline
OBART10G15660.1 Flavonoid C4H medium borderline
OBART01G05440.1 Rosmarinic Acid C4H low borderline
OBART01G06210.1 Rosmarinic Acid C4H low borderline
OBART01G07090.1 Rosmarinic Acid C4H low borderline
OBART01G07100.1 Rosmarinic Acid C4H low borderline
OBART01G07110.1 Rosmarinic Acid C4H low borderline
OBART01G07980.1 Rosmarinic Acid C4H low borderline
OBART01G08000.1 Rosmarinic Acid C4H low borderline
OBART01G08010.1 Rosmarinic Acid C4H low borderline
OBART01G14730.1 Rosmarinic Acid C4H low borderline
OBART01G15960.1 Rosmarinic Acid C4H low borderline
OBART01G16440.1 Rosmarinic Acid C4H low borderline
OBART01G17600.1 Rosmarinic Acid C4H low borderline
OBART01G19690.1 Rosmarinic Acid C4H low borderline
OBART01G21840.1 Rosmarinic Acid C4H low borderline
OBART01G21840.2 Rosmarinic Acid C4H low borderline
OBART01G23440.1 Rosmarinic Acid C4H low borderline
OBART01G23450.1 Rosmarinic Acid C4H low borderline
OBART01G23450.2 Rosmarinic Acid C4H low borderline
OBART01G23460.1 Rosmarinic Acid C4H low borderline
OBART01G23460.2 Rosmarinic Acid C4H low borderline
OBART01G23460.3 Rosmarinic Acid C4H low borderline
OBART01G23460.4 Rosmarinic Acid C4H low borderline
OBART01G23470.1 Rosmarinic Acid C4H low borderline
OBART01G27770.1 Rosmarinic Acid C4H medium pass
OBART01G27780.1 Rosmarinic Acid C4H low borderline
OBART01G27810.1 Rosmarinic Acid C4H low borderline
OBART01G29620.1 Rosmarinic Acid C4H low borderline
OBART01G34240.1 Rosmarinic Acid C4H low borderline
OBART01G34250.2 Rosmarinic Acid C4H low borderline
OBART01G35270.1 Rosmarinic Acid C4H medium pass
OBART01G44410.1 Rosmarinic Acid C4H low borderline
OBART02G00700.1 Rosmarinic Acid C4H low borderline
OBART02G00700.2 Rosmarinic Acid C4H low borderline
OBART02G05540.1 Rosmarinic Acid C4H low borderline
OBART02G05540.2 Rosmarinic Acid C4H low borderline
OBART02G05540.3 Rosmarinic Acid C4H low borderline
OBART02G06380.1 Rosmarinic Acid C4H medium pass