PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status
OBART04G26880.1 Phenylpropanoid CAD medium borderline
OBART04G26880.2 Phenylpropanoid CAD medium borderline
OBART05G01060.1 Phenylpropanoid CAD low borderline
OBART05G09270.1 Phenylpropanoid CAD low borderline
OBART05G11030.2 Phenylpropanoid CAD low borderline
OBART06G21330.1 Phenylpropanoid CAD medium borderline
OBART06G21340.1 Phenylpropanoid CAD medium borderline
OBART06G25020.1 Phenylpropanoid CAD medium borderline
OBART07G22630.1 Phenylpropanoid CAD low borderline
OBART07G22630.2 Phenylpropanoid CAD low borderline
OBART08G00660.1 Phenylpropanoid CAD low borderline
OBART08G02480.1 Phenylpropanoid CAD low borderline
OBART08G04130.1 Phenylpropanoid CAD medium pass
OBART08G04130.2 Phenylpropanoid CAD medium pass
OBART08G04130.3 Phenylpropanoid CAD medium pass
OBART08G04130.4 Phenylpropanoid CAD medium pass
OBART08G08410.1 Phenylpropanoid CAD medium pass
OBART08G20390.1 Phenylpropanoid CAD low borderline
OBART09G01440.1 Phenylpropanoid CAD low borderline
OBART09G09550.1 Phenylpropanoid CAD medium pass
OBART09G09570.1 Phenylpropanoid CAD medium pass
OBART09G09580.1 Phenylpropanoid CAD medium pass
OBART09G09600.1 Phenylpropanoid CAD medium pass
OBART09G14980.2 Phenylpropanoid CAD low borderline
OBART10G03900.1 Phenylpropanoid CAD low borderline
OBART10G04780.1 Phenylpropanoid CAD medium pass
OBART10G04780.2 Phenylpropanoid CAD medium pass
OBART10G10780.1 Phenylpropanoid CAD medium pass
OBART11G06350.1 Phenylpropanoid CAD low borderline
OBART11G06360.1 Phenylpropanoid CAD low borderline
OBART11G06370.1 Phenylpropanoid CAD low borderline
OBART12G12600.1 Phenylpropanoid CAD low borderline