Oryza barthii (oryza_barthii)
Imported from atlas release summary for Oryza barthii.
1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1727
Candidate Genes
C4H
6.28%
C3'H/CYP98A
6.15%
BAHD
5.95%
UGT
4.15%
4CL
3.44%
T3O
3.42%
7DLGT
3.4%
CYP76
3.31%
Other Families
63.9%
More Families (97)
UFGT
151
3.27%
IFS
135
2.92%
POD
129
2.79%
F3'H/CYP75B
126
2.73%
DWF4/CYP90B1
111
2.4%
NMT
101
2.19%
STR
94
2.03%
BR6OX2/CYP85A2
94
2.03%
F3H
88
1.9%
SMT1/SMT2/SMT3
83
1.8%
CAD
82
1.77%
CYP71
79
1.71%
TPS
79
1.71%
GES
70
1.51%
CAS
70
1.51%
SGD
58
1.26%
PYKS
51
1.1%
TRI/TRII
50
1.08%
G8O/G8H
48
1.04%
CODM/T6ODM
44
0.95%
IFR
43
0.93%
SLS
42
0.91%
H6H
42
0.91%
CCR
42
0.91%
FNS
39
0.84%
COMT
39
0.84%
CSE
38
0.82%
RAS
38
0.82%
T16H
37
0.8%
ANR
37
0.8%
16OMT
36
0.78%
PAL
36
0.78%
LAC
36
0.78%
PMT
34
0.74%
CHS
34
0.74%
CYP51G1
34
0.74%
GS
32
0.69%
HCT
31
0.67%
CYP90D1
30
0.65%
F5H/CYP84A
27
0.58%
NCS
26
0.56%
F3'5'H/CYP75A
26
0.56%
BR6OX1/CYP85A1
25
0.54%
DFR
23
0.5%
8HGO
22
0.48%
IO
21
0.45%
COR
19
0.41%
CPD/CYP90A1
18
0.39%
BBE
17
0.37%
CNMT
14
0.3%
TAT
14
0.3%
CPR
14
0.3%
LAMT
13
0.28%
FPPS
12
0.26%
7DLH
11
0.24%
CYP80B1
11
0.24%
CCoAOMT
10
0.22%
CHI
9
0.19%
SQS/FDFT1
9
0.19%
AACT
9
0.19%
GGPPS
9
0.19%
CYP719
8
0.17%
ANS/LDOX
8
0.17%
MPO
7
0.15%
HPPR
7
0.15%
ROT3/CYP90C1
7
0.15%
ADC
6
0.13%
TYDC_DDC
6
0.13%
TDC
6
0.13%
XMT_MXMT_DXMT
6
0.13%
HYD1
6
0.13%
SMO1/SMO2
6
0.13%
MCT/IspD
6
0.13%
MVK
6
0.13%
CYP80F1
5
0.11%
ODC
5
0.11%
FLS
5
0.11%
DET2
5
0.11%
DXS
5
0.11%
DWF1
4
0.09%
MVD
4
0.09%
ISY
3
0.06%
SQE
3
0.06%
MDS/IspF
3
0.06%
HMGR
3
0.06%
HMGS
3
0.06%
PMK
3
0.06%
FK
2
0.04%
CMK/IspE
2
0.04%
HDS/IspG
2
0.04%
HDR/IspH
2
0.04%
IDI
2
0.04%
6OMT_4OMT_SOMT
1
0.02%
DWF7
1
0.02%
DWF5
1
0.02%
CPI1
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 508 | 19 | BAHD (188) | View species results |
| Alkaloid pathway | 436 | 26 | 7DLGT (63) | View species results |
| Phenylpropanoid pathway | 274 | 12 | POD (93) | View species results |
| Flavonoid pathway | 242 | 12 | UFGT (132) | View species results |
| Rosmarinic acid pathway | 140 | 7 | C4H (68) | View species results |
| Steroid pathway | 127 | 14 | CAS (47) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1780 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 344 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| OBART01G05440.1 | Terpenoid | CYP76 | low | borderline | CYP76__00024__sp_W0FKI0_DOX1_PERHD |
| OBART01G07980.1 | Terpenoid | CYP76 | low | borderline | CYP76__00014__sp_I3PFJ5_C76AD_BETVU |
| OBART01G08010.1 | Terpenoid | CYP76 | low | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| OBART01G14730.1 | Terpenoid | CYP76 | medium | pass | CYP76__00016__sp_P0DXJ6_C7631_LOPWI |
| OBART01G19690.1 | Terpenoid | CYP76 | medium | pass | CYP76__00018__sp_Q69X58_C76M7_ORYSJ |
| OBART01G27770.1 | Terpenoid | CYP76 | medium | pass | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| OBART01G27810.1 | Terpenoid | CYP76 | low | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| OBART01G35270.1 | Terpenoid | CYP76 | medium | pass | CYP76__00018__sp_Q69X58_C76M7_ORYSJ |
| OBART02G00700.1 | Terpenoid | CYP76 | low | borderline | CYP76__00022__sp_Q8VWZ7_C76B6_CATRO |
| OBART02G00700.2 | Terpenoid | CYP76 | low | borderline | CYP76__00022__sp_Q8VWZ7_C76B6_CATRO |
| OBART02G00790.1 | Terpenoid | CYP76 | low | borderline | CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ |
| OBART02G09090.1 | Terpenoid | CYP76 | low | borderline | CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ |
| OBART02G12230.1 | Terpenoid | CYP76 | medium | pass | CYP76__00022__sp_Q8VWZ7_C76B6_CATRO |
| OBART02G12230.2 | Terpenoid | CYP76 | low | borderline | CYP76__00022__sp_Q8VWZ7_C76B6_CATRO |
| OBART02G12230.3 | Terpenoid | CYP76 | low | borderline | CYP76__00022__sp_Q8VWZ7_C76B6_CATRO |
| OBART02G14140.1 | Terpenoid | CYP76 | medium | pass | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| OBART02G16220.1 | Terpenoid | CYP76 | medium | pass | CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU |
| OBART02G16230.1 | Terpenoid | CYP76 | medium | pass | CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU |
| OBART02G17500.1 | Terpenoid | CYP76 | medium | pass | CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU |
| OBART02G17540.1 | Terpenoid | CYP76 | low | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| OBART02G17540.2 | Terpenoid | CYP76 | low | borderline | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| OBART02G17550.1 | Terpenoid | CYP76 | medium | borderline | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| OBART02G17560.1 | Terpenoid | CYP76 | medium | borderline | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| OBART02G21170.1 | Terpenoid | CYP76 | medium | borderline | CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ |
| OBART02G21200.1 | Terpenoid | CYP76 | medium | borderline | CYP76__00019__sp_Q6YTF1_C76M8_ORYSJ |
| OBART02G21240.1 | Terpenoid | CYP76 | medium | borderline | CYP76__00019__sp_Q6YTF1_C76M8_ORYSJ |
| OBART02G21340.1 | Terpenoid | CYP76 | medium | borderline | CYP76__00021__sp_Q6Z5I7_C76M6_ORYSJ |
| OBART03G00990.1 | Terpenoid | CYP76 | medium | pass | CYP76__00022__sp_Q8VWZ7_C76B6_CATRO |
| OBART03G02740.1 | Terpenoid | CYP76 | medium | pass | CYP76__00004__sp_A0A0Y0GRS3_C76H3_SALMI |
| OBART03G10580.1 | Terpenoid | CYP76 | medium | pass | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| OBART03G10590.1 | Terpenoid | CYP76 | medium | borderline | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| OBART03G10680.1 | Terpenoid | CYP76 | medium | pass | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| OBART03G15050.1 | Terpenoid | CYP76 | low | borderline | CYP76__00016__sp_P0DXJ6_C7631_LOPWI |
| OBART03G18460.1 | Terpenoid | CYP76 | medium | borderline | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| OBART03G22840.1 | Terpenoid | CYP76 | medium | pass | CYP76__00016__sp_P0DXJ6_C7631_LOPWI |
| OBART03G23580.1 | Terpenoid | CYP76 | medium | pass | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| OBART03G27760.1 | Terpenoid | CYP76 | medium | borderline | CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ |
| OBART03G28200.1 | Terpenoid | CYP76 | low | borderline | CYP76__00008__sp_A0A1D8QMG4_C76K8_ROSOF |
| OBART03G34950.1 | Terpenoid | CYP76 | low | borderline | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| OBART03G34950.2 | Terpenoid | CYP76 | medium | borderline | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| OBART03G34950.4 | Terpenoid | CYP76 | medium | pass | CYP76__00022__sp_Q8VWZ7_C76B6_CATRO |
| OBART04G00070.1 | Terpenoid | CYP76 | medium | borderline | CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU |
| OBART04G01300.1 | Terpenoid | CYP76 | low | borderline | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| OBART04G02550.1 | Terpenoid | CYP76 | low | borderline | CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU |
| OBART04G02570.1 | Terpenoid | CYP76 | low | borderline | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| OBART04G02620.1 | Terpenoid | CYP76 | low | borderline | CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU |
| OBART04G05400.1 | Terpenoid | CYP76 | medium | pass | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| OBART04G11620.1 | Terpenoid | CYP76 | medium | pass | CYP76__00014__sp_I3PFJ5_C76AD_BETVU |
| OBART04G16250.1 | Terpenoid | CYP76 | medium | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| OBART04G16260.1 | Terpenoid | CYP76 | medium | borderline | CYP76__00013__sp_D1MI46_C76BA_SWEMU |