PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
OBART07G04400.1 Flavonoid F3H low borderline
OBART07G04410.1 Flavonoid F3H medium pass
OBART08G07640.1 Flavonoid F3H low borderline
OBART08G07640.2 Flavonoid F3H low borderline
OBART08G14770.1 Flavonoid F3H low borderline
OBART08G14770.2 Flavonoid F3H low borderline
OBART08G18240.1 Flavonoid F3H low borderline
OBART08G18250.1 Flavonoid F3H medium borderline
OBART08G23590.1 Flavonoid F3H medium borderline
OBART09G01930.1 Flavonoid F3H low borderline
OBART09G02060.1 Flavonoid F3H low borderline
OBART09G02060.2 Flavonoid F3H low borderline
OBART09G07030.1 Flavonoid F3H medium borderline
OBART09G07030.2 Flavonoid F3H low borderline
OBART09G07080.1 Flavonoid F3H medium borderline
OBART09G12350.1 Flavonoid F3H medium borderline
OBART09G12370.1 Flavonoid F3H medium borderline
OBART09G20280.1 Flavonoid F3H medium borderline
OBART10G16180.1 Flavonoid F3H low borderline
OBART10G16180.2 Flavonoid F3H low borderline
OBART10G16180.3 Flavonoid F3H low borderline
OBART10G16180.4 Flavonoid F3H low borderline
OBART10G16180.5 Flavonoid F3H low borderline
OBART10G16190.1 Flavonoid F3H low borderline
OBART10G16250.1 Flavonoid F3H low borderline
OBART10G16970.1 Flavonoid F3H medium borderline
OBART10G18280.1 Flavonoid F3H medium borderline
OBART10G18290.1 Flavonoid F3H medium borderline
OBART10G18310.1 Flavonoid F3H medium borderline
OBART10G18320.1 Flavonoid F3H medium borderline
OBART10G18340.1 Flavonoid F3H medium borderline
OBART10G18360.1 Flavonoid F3H low borderline
OBART10G18370.1 Flavonoid F3H low borderline
OBART10G18390.1 Flavonoid F3H medium borderline
OBART10G18410.1 Flavonoid F3H medium borderline
OBART11G05390.1 Flavonoid F3H medium borderline
OBART11G09110.1 Flavonoid F3H low borderline
OBART11G11910.1 Flavonoid F3H medium borderline