Oryza barthii (oryza_barthii)
Imported from atlas release summary for Oryza barthii.
1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1727
Candidate Genes
C4H
6.28%
C3'H/CYP98A
6.15%
BAHD
5.95%
UGT
4.15%
4CL
3.44%
T3O
3.42%
7DLGT
3.4%
CYP76
3.31%
Other Families
63.9%
More Families (97)
UFGT
151
3.27%
IFS
135
2.92%
POD
129
2.79%
F3'H/CYP75B
126
2.73%
DWF4/CYP90B1
111
2.4%
NMT
101
2.19%
STR
94
2.03%
BR6OX2/CYP85A2
94
2.03%
F3H
88
1.9%
SMT1/SMT2/SMT3
83
1.8%
CAD
82
1.77%
CYP71
79
1.71%
TPS
79
1.71%
GES
70
1.51%
CAS
70
1.51%
SGD
58
1.26%
PYKS
51
1.1%
TRI/TRII
50
1.08%
G8O/G8H
48
1.04%
CODM/T6ODM
44
0.95%
IFR
43
0.93%
SLS
42
0.91%
H6H
42
0.91%
CCR
42
0.91%
FNS
39
0.84%
COMT
39
0.84%
CSE
38
0.82%
RAS
38
0.82%
T16H
37
0.8%
ANR
37
0.8%
16OMT
36
0.78%
PAL
36
0.78%
LAC
36
0.78%
PMT
34
0.74%
CHS
34
0.74%
CYP51G1
34
0.74%
GS
32
0.69%
HCT
31
0.67%
CYP90D1
30
0.65%
F5H/CYP84A
27
0.58%
NCS
26
0.56%
F3'5'H/CYP75A
26
0.56%
BR6OX1/CYP85A1
25
0.54%
DFR
23
0.5%
8HGO
22
0.48%
IO
21
0.45%
COR
19
0.41%
CPD/CYP90A1
18
0.39%
BBE
17
0.37%
CNMT
14
0.3%
TAT
14
0.3%
CPR
14
0.3%
LAMT
13
0.28%
FPPS
12
0.26%
7DLH
11
0.24%
CYP80B1
11
0.24%
CCoAOMT
10
0.22%
CHI
9
0.19%
SQS/FDFT1
9
0.19%
AACT
9
0.19%
GGPPS
9
0.19%
CYP719
8
0.17%
ANS/LDOX
8
0.17%
MPO
7
0.15%
HPPR
7
0.15%
ROT3/CYP90C1
7
0.15%
ADC
6
0.13%
TYDC_DDC
6
0.13%
TDC
6
0.13%
XMT_MXMT_DXMT
6
0.13%
HYD1
6
0.13%
SMO1/SMO2
6
0.13%
MCT/IspD
6
0.13%
MVK
6
0.13%
CYP80F1
5
0.11%
ODC
5
0.11%
FLS
5
0.11%
DET2
5
0.11%
DXS
5
0.11%
DWF1
4
0.09%
MVD
4
0.09%
ISY
3
0.06%
SQE
3
0.06%
MDS/IspF
3
0.06%
HMGR
3
0.06%
HMGS
3
0.06%
PMK
3
0.06%
FK
2
0.04%
CMK/IspE
2
0.04%
HDS/IspG
2
0.04%
HDR/IspH
2
0.04%
IDI
2
0.04%
6OMT_4OMT_SOMT
1
0.02%
DWF7
1
0.02%
DWF5
1
0.02%
CPI1
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 508 | 19 | BAHD (188) | View species results |
| Alkaloid pathway | 436 | 26 | 7DLGT (63) | View species results |
| Phenylpropanoid pathway | 274 | 12 | POD (93) | View species results |
| Flavonoid pathway | 242 | 12 | UFGT (132) | View species results |
| Rosmarinic acid pathway | 140 | 7 | C4H (68) | View species results |
| Steroid pathway | 127 | 14 | CAS (47) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1780 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 344 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| OBART04G04720.1 | Phenylpropanoid | POD | medium | pass | POD__00012__sp_Q10N21_APX1_ORYSJ |
| OBART04G11770.1 | Phenylpropanoid | POD | low | borderline | POD__00019__sp_Q949Y3_PPA26_ARATH |
| OBART04G13220.1 | Phenylpropanoid | POD | medium | pass | POD__00015__sp_Q69SV0_APX8_ORYSJ |
| OBART04G21230.1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| OBART04G21230.2 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| OBART04G21920.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| OBART04G25720.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| OBART04G26710.1 | Phenylpropanoid | POD | low | borderline | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| OBART04G26710.2 | Phenylpropanoid | POD | low | borderline | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| OBART04G30130.1 | Phenylpropanoid | POD | low | borderline | POD__00006__sp_O22850_GPX3_ARATH |
| OBART05G02390.1 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| OBART05G02400.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| OBART05G02410.1 | Phenylpropanoid | POD | low | borderline | POD__00002__sp_A5H8G4_PER1_MAIZE |
| OBART05G02410.2 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| OBART05G02430.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| OBART05G21760.1 | Phenylpropanoid | POD | low | borderline | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| OBART06G05580.1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| OBART06G06120.1 | Phenylpropanoid | POD | medium | pass | POD__00016__sp_Q6QPJ6_PRXQ_POPJC |
| OBART06G08750.1 | Phenylpropanoid | POD | low | borderline | POD__00010__sp_P84516_PER1_SORBI |
| OBART06G12140.1 | Phenylpropanoid | POD | low | borderline | POD__00002__sp_A5H8G4_PER1_MAIZE |
| OBART06G14840.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| OBART06G15590.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| OBART06G16750.1 | Phenylpropanoid | POD | low | borderline | POD__00001__sp_A5H452_PER70_MAIZE |
| OBART06G17850.1 | Phenylpropanoid | POD | low | borderline | POD__00001__sp_A5H452_PER70_MAIZE |
| OBART06G20040.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| OBART06G20210.1 | Phenylpropanoid | POD | medium | pass | POD__00018__sp_Q8H0V5_OCP3_ARATH |
| OBART06G21500.1 | Phenylpropanoid | POD | medium | pass | POD__00026__sp_Q9XEX2_PRX2B_ARATH |
| OBART06G22570.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| OBART06G25920.1 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| OBART06G28190.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| OBART07G00280.1 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| OBART07G01150.1 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| OBART07G01160.1 | Phenylpropanoid | POD | low | borderline | POD__00010__sp_P84516_PER1_SORBI |
| OBART07G03570.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| OBART07G05660.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| OBART07G07930.1 | Phenylpropanoid | POD | low | borderline | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| OBART07G07930.2 | Phenylpropanoid | POD | low | borderline | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| OBART07G09630.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| OBART07G09630.2 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| OBART07G09630.3 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| OBART07G09630.4 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| OBART07G09630.5 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| OBART07G09630.6 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| OBART07G13940.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| OBART07G13940.2 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| OBART07G23620.1 | Phenylpropanoid | POD | medium | pass | POD__00007__sp_P0C5C9_REHYA_ORYSJ |
| OBART07G23630.1 | Phenylpropanoid | POD | medium | pass | POD__00007__sp_P0C5C9_REHYA_ORYSJ |
| OBART07G23650.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| OBART07G23660.1 | Phenylpropanoid | POD | low | borderline | POD__00010__sp_P84516_PER1_SORBI |
| OBART07G23670.1 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |