Oryza barthii (oryza_barthii)
Imported from atlas release summary for Oryza barthii.
1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1727
Candidate Genes
C4H
6.28%
C3'H/CYP98A
6.15%
BAHD
5.95%
UGT
4.15%
4CL
3.44%
T3O
3.42%
7DLGT
3.4%
CYP76
3.31%
Other Families
63.9%
More Families (97)
UFGT
151
3.27%
IFS
135
2.92%
POD
129
2.79%
F3'H/CYP75B
126
2.73%
DWF4/CYP90B1
111
2.4%
NMT
101
2.19%
STR
94
2.03%
BR6OX2/CYP85A2
94
2.03%
F3H
88
1.9%
SMT1/SMT2/SMT3
83
1.8%
CAD
82
1.77%
CYP71
79
1.71%
TPS
79
1.71%
GES
70
1.51%
CAS
70
1.51%
SGD
58
1.26%
PYKS
51
1.1%
TRI/TRII
50
1.08%
G8O/G8H
48
1.04%
CODM/T6ODM
44
0.95%
IFR
43
0.93%
SLS
42
0.91%
H6H
42
0.91%
CCR
42
0.91%
FNS
39
0.84%
COMT
39
0.84%
CSE
38
0.82%
RAS
38
0.82%
T16H
37
0.8%
ANR
37
0.8%
16OMT
36
0.78%
PAL
36
0.78%
LAC
36
0.78%
PMT
34
0.74%
CHS
34
0.74%
CYP51G1
34
0.74%
GS
32
0.69%
HCT
31
0.67%
CYP90D1
30
0.65%
F5H/CYP84A
27
0.58%
NCS
26
0.56%
F3'5'H/CYP75A
26
0.56%
BR6OX1/CYP85A1
25
0.54%
DFR
23
0.5%
8HGO
22
0.48%
IO
21
0.45%
COR
19
0.41%
CPD/CYP90A1
18
0.39%
BBE
17
0.37%
CNMT
14
0.3%
TAT
14
0.3%
CPR
14
0.3%
LAMT
13
0.28%
FPPS
12
0.26%
7DLH
11
0.24%
CYP80B1
11
0.24%
CCoAOMT
10
0.22%
CHI
9
0.19%
SQS/FDFT1
9
0.19%
AACT
9
0.19%
GGPPS
9
0.19%
CYP719
8
0.17%
ANS/LDOX
8
0.17%
MPO
7
0.15%
HPPR
7
0.15%
ROT3/CYP90C1
7
0.15%
ADC
6
0.13%
TYDC_DDC
6
0.13%
TDC
6
0.13%
XMT_MXMT_DXMT
6
0.13%
HYD1
6
0.13%
SMO1/SMO2
6
0.13%
MCT/IspD
6
0.13%
MVK
6
0.13%
CYP80F1
5
0.11%
ODC
5
0.11%
FLS
5
0.11%
DET2
5
0.11%
DXS
5
0.11%
DWF1
4
0.09%
MVD
4
0.09%
ISY
3
0.06%
SQE
3
0.06%
MDS/IspF
3
0.06%
HMGR
3
0.06%
HMGS
3
0.06%
PMK
3
0.06%
FK
2
0.04%
CMK/IspE
2
0.04%
HDS/IspG
2
0.04%
HDR/IspH
2
0.04%
IDI
2
0.04%
6OMT_4OMT_SOMT
1
0.02%
DWF7
1
0.02%
DWF5
1
0.02%
CPI1
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 508 | 19 | BAHD (188) | View species results |
| Alkaloid pathway | 436 | 26 | 7DLGT (63) | View species results |
| Phenylpropanoid pathway | 274 | 12 | POD (93) | View species results |
| Flavonoid pathway | 242 | 12 | UFGT (132) | View species results |
| Rosmarinic acid pathway | 140 | 7 | C4H (68) | View species results |
| Steroid pathway | 127 | 14 | CAS (47) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1780 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 344 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| OBART08G04050.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART08G04550.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| OBART08G13230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART08G16230.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| OBART08G22360.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART08G22360.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART09G01220.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART09G01220.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART09G02200.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART09G05920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART09G05970.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART09G05970.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART09G05970.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART09G05980.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART09G06010.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART09G06010.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART09G08110.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| OBART09G09650.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART09G13640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART09G13640.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART09G15210.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| OBART10G03350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART10G05190.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART10G05190.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART10G11510.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART10G14340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART10G17400.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| OBART11G02600.3 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| OBART11G04830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART11G11090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART11G18400.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART11G18400.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART11G18400.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART12G00010.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART12G00010.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART12G00010.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART12G02290.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| OBART12G02300.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| OBART12G07110.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART12G07110.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART12G09610.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART12G09640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART12G13550.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OBART12G13550.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |