PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
Reset
Gene Pathway Family Confidence Status
OBART07G07320.1 Alkaloid T3O medium borderline
OBART07G07340.1 Alkaloid T3O medium borderline
OBART07G10620.1 Alkaloid T3O medium borderline
OBART07G10670.1 Alkaloid T3O medium borderline
OBART07G14860.1 Alkaloid T3O medium pass
OBART07G16320.1 Alkaloid T3O medium pass
OBART07G16340.1 Alkaloid T3O medium pass
OBART07G16370.1 Alkaloid T3O medium pass
OBART07G16380.1 Alkaloid T3O medium pass
OBART07G16380.2 Alkaloid T3O medium pass
OBART07G16400.1 Alkaloid T3O medium pass
OBART07G16400.2 Alkaloid T3O medium pass
OBART07G16400.3 Alkaloid T3O medium pass
OBART07G16410.1 Alkaloid T3O medium pass
OBART07G21420.1 Alkaloid T3O medium borderline
OBART07G26500.1 Alkaloid T3O medium pass
OBART08G00410.1 Alkaloid T3O medium borderline
OBART08G00430.1 Alkaloid T3O medium borderline
OBART08G00450.1 Alkaloid T3O medium borderline
OBART08G00470.1 Alkaloid T3O medium borderline
OBART08G06550.1 Alkaloid T3O medium borderline
OBART08G08130.1 Alkaloid T3O medium pass
OBART08G08160.1 Alkaloid T3O medium pass
OBART08G19870.1 Alkaloid T3O medium borderline
OBART08G22660.1 Alkaloid T3O medium borderline
OBART09G02750.1 Alkaloid T3O medium borderline
OBART09G02770.1 Alkaloid T3O medium borderline
OBART09G03240.1 Alkaloid T3O medium borderline
OBART09G11770.1 Alkaloid T3O medium borderline
OBART09G11790.1 Alkaloid T3O medium borderline
OBART09G11790.2 Alkaloid T3O medium borderline
OBART09G11800.1 Alkaloid T3O medium borderline
OBART09G17380.1 Alkaloid T3O medium borderline
OBART09G17380.2 Alkaloid T3O medium borderline
OBART10G03440.1 Alkaloid T3O medium borderline
OBART10G03550.1 Alkaloid T3O medium borderline
OBART10G03820.2 Alkaloid T3O medium borderline
OBART10G03850.1 Alkaloid T3O medium borderline
OBART10G03940.1 Alkaloid T3O low borderline
OBART10G04830.1 Alkaloid T3O medium borderline
OBART10G11340.1 Alkaloid T3O medium pass
OBART10G13830.1 Alkaloid T3O medium pass
OBART10G15460.1 Alkaloid T3O medium borderline
OBART10G15650.1 Alkaloid T3O medium borderline
OBART10G16360.1 Alkaloid T3O medium pass
OBART10G16360.2 Alkaloid T3O medium pass
OBART10G16370.1 Alkaloid T3O medium pass
OBART11G02640.1 Alkaloid T3O medium pass
OBART11G13010.1 Alkaloid T3O medium borderline
OBART11G13110.1 Alkaloid T3O medium borderline