PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
OBART03G40310.1 Flavonoid UFGT low borderline
OBART04G03880.1 Flavonoid UFGT high pass
OBART04G04050.1 Flavonoid UFGT high pass
OBART04G04050.2 Flavonoid UFGT high pass
OBART04G04060.1 Flavonoid UFGT medium pass
OBART04G04060.2 Flavonoid UFGT medium pass
OBART04G05770.1 Flavonoid UFGT high pass
OBART04G05850.1 Flavonoid UFGT high pass
OBART04G05890.1 Flavonoid UFGT medium pass
OBART04G05910.1 Flavonoid UFGT low borderline
OBART04G07310.1 Flavonoid UFGT medium pass
OBART04G07500.1 Flavonoid UFGT medium pass
OBART04G07510.1 Flavonoid UFGT low borderline
OBART04G07560.1 Flavonoid UFGT medium pass
OBART04G14430.1 Flavonoid UFGT low borderline
OBART04G18040.1 Flavonoid UFGT low borderline
OBART04G19100.1 Flavonoid UFGT high pass
OBART04G19170.1 Flavonoid UFGT high pass
OBART04G21240.1 Flavonoid UFGT medium pass
OBART04G21260.1 Flavonoid UFGT medium pass
OBART04G21820.1 Flavonoid UFGT medium pass
OBART04G21830.1 Flavonoid UFGT medium pass
OBART05G00660.1 Flavonoid UFGT medium pass
OBART05G05170.1 Flavonoid UFGT medium pass
OBART05G05190.1 Flavonoid UFGT medium pass
OBART05G07310.1 Flavonoid UFGT high pass
OBART05G21330.1 Flavonoid UFGT low borderline
OBART05G21780.1 Flavonoid UFGT medium pass
OBART05G21790.1 Flavonoid UFGT high pass
OBART05G23410.1 Flavonoid UFGT high pass
OBART05G23420.1 Flavonoid UFGT high pass
OBART05G23430.1 Flavonoid UFGT medium pass
OBART05G23440.1 Flavonoid UFGT medium pass
OBART05G23450.1 Flavonoid UFGT low borderline
OBART05G23460.1 Flavonoid UFGT medium pass
OBART05G23470.1 Flavonoid UFGT low borderline
OBART05G23470.3 Flavonoid UFGT low borderline
OBART05G25050.1 Flavonoid UFGT medium pass
OBART06G05870.1 Flavonoid UFGT low borderline
OBART06G07050.1 Flavonoid UFGT medium pass
OBART06G07060.1 Flavonoid UFGT medium pass
OBART06G07360.1 Flavonoid UFGT high pass
OBART06G07370.1 Flavonoid UFGT high pass
OBART06G07670.1 Flavonoid UFGT high pass
OBART06G10400.1 Flavonoid UFGT high pass
OBART06G10860.1 Flavonoid UFGT medium pass
OBART06G10890.1 Flavonoid UFGT medium pass
OBART06G11240.1 Flavonoid UFGT high pass
OBART06G11290.1 Flavonoid UFGT high pass
OBART06G11320.1 Flavonoid UFGT medium pass