PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

2196
Candidate Protein Records
1727
Pathway-Level Records
4621
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OBART04G02550.1 Alkaloid IO medium borderline
OBART05G00110.1 Alkaloid IO low borderline
OBART05G22660.1 Alkaloid IO medium borderline
OBART06G00070.1 Alkaloid IO medium borderline
OBART06G10230.1 Alkaloid IO medium pass
OBART08G01970.1 Alkaloid IO medium borderline
OBART08G17080.1 Alkaloid IO medium borderline
OBART08G19910.1 Alkaloid IO medium borderline
OBART08G22600.1 Alkaloid IO medium borderline
OBART10G01700.1 Alkaloid IO low borderline
OBART10G03460.1 Alkaloid IO medium borderline
OBART10G08170.1 Alkaloid IO medium borderline
OBART10G08170.2 Alkaloid IO medium borderline
OBART12G17050.1 Alkaloid IO medium borderline
OBART03G21800.1 Alkaloid ISY medium pass
OBART03G22540.1 Alkaloid ISY medium pass
OBART07G21260.1 Alkaloid ISY medium pass
OBART02G30400.1 Alkaloid LAMT medium borderline
OBART04G28640.1 Alkaloid LAMT medium borderline
OBART04G28730.2 Alkaloid LAMT medium borderline
OBART06G09050.1 Alkaloid LAMT medium borderline
OBART06G09110.1 Alkaloid LAMT medium borderline
OBART06G09150.1 Alkaloid LAMT medium borderline
OBART06G10690.1 Alkaloid LAMT medium borderline
OBART06G12390.1 Alkaloid LAMT medium borderline
OBART06G13170.1 Alkaloid LAMT medium borderline
OBART06G13170.2 Alkaloid LAMT medium borderline
OBART11G08620.1 Alkaloid LAMT medium borderline
OBART11G08640.1 Alkaloid LAMT medium borderline
OBART11G08730.1 Alkaloid LAMT medium borderline
OBART02G22520.1 Alkaloid MPO medium pass
OBART04G01490.1 Alkaloid MPO medium pass
OBART04G05710.1 Alkaloid MPO medium pass
OBART04G16020.1 Alkaloid MPO high pass
OBART06G13510.1 Alkaloid MPO high pass
OBART06G13520.1 Alkaloid MPO medium pass
OBART07G19400.1 Alkaloid MPO low borderline
OBART01G05720.1 Alkaloid NCS medium borderline
OBART01G06970.1 Alkaloid NCS medium borderline
OBART01G14830.1 Alkaloid NCS medium borderline
OBART03G22690.1 Alkaloid NCS medium borderline
OBART03G22690.2 Alkaloid NCS medium borderline
OBART04G22830.1 Alkaloid NCS medium borderline
OBART04G23620.1 Alkaloid NCS medium pass
OBART04G23630.1 Alkaloid NCS medium pass
OBART04G27120.1 Alkaloid NCS medium borderline
OBART04G28770.1 Alkaloid NCS medium borderline
OBART04G28790.1 Alkaloid NCS medium borderline
OBART05G03380.1 Alkaloid NCS medium borderline
OBART06G05010.1 Alkaloid NCS medium borderline