PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

2196
Candidate Protein Records
1727
Pathway-Level Records
4621
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OBART09G07280.1 Alkaloid NMT medium pass
OBART09G07450.1 Alkaloid NMT medium pass
OBART09G09880.1 Alkaloid NMT low borderline
OBART09G10080.1 Alkaloid NMT medium pass
OBART09G10080.2 Alkaloid NMT medium pass
OBART09G19260.1 Alkaloid NMT low borderline
OBART10G14010.1 Alkaloid NMT medium borderline
OBART11G01880.1 Alkaloid NMT medium pass
OBART11G19080.1 Alkaloid NMT medium pass
OBART12G01590.1 Alkaloid NMT medium pass
OBART12G05700.1 Alkaloid NMT medium borderline
OBART12G18660.1 Alkaloid NMT low borderline
OBART12G18660.2 Alkaloid NMT low borderline
OBART12G18660.3 Alkaloid NMT low borderline
OBART02G16720.1 Alkaloid ODC medium pass
OBART03G28030.1 Alkaloid ODC medium pass
OBART04G01500.1 Alkaloid ODC medium pass
OBART08G07860.1 Alkaloid ODC low borderline
OBART09G18290.1 Alkaloid ODC medium pass
OBART01G00390.1 Alkaloid PMT low borderline
OBART01G05110.1 Alkaloid PMT medium pass
OBART01G05570.1 Alkaloid PMT medium pass
OBART01G12200.1 Alkaloid PMT medium pass
OBART01G14720.1 Alkaloid PMT medium pass
OBART01G22700.1 Alkaloid PMT medium pass
OBART02G10050.1 Alkaloid PMT medium pass
OBART02G10970.1 Alkaloid PMT medium borderline
OBART03G30540.1 Alkaloid PMT low borderline
OBART04G02730.1 Alkaloid PMT medium pass
OBART04G03710.1 Alkaloid PMT medium pass
OBART05G01590.1 Alkaloid PMT low borderline
OBART05G02540.1 Alkaloid PMT medium pass
OBART05G05290.1 Alkaloid PMT medium pass
OBART05G09870.1 Alkaloid PMT medium pass
OBART06G05530.1 Alkaloid PMT low borderline
OBART06G05550.1 Alkaloid PMT low borderline
OBART06G17050.1 Alkaloid PMT medium borderline
OBART06G17050.2 Alkaloid PMT medium borderline
OBART07G11230.1 Alkaloid PMT medium borderline
OBART07G20500.1 Alkaloid PMT medium pass
OBART08G05920.1 Alkaloid PMT low borderline
OBART08G22300.1 Alkaloid PMT low borderline
OBART08G22310.1 Alkaloid PMT low borderline
OBART09G10620.1 Alkaloid PMT medium pass
OBART10G00300.1 Alkaloid PMT medium pass
OBART10G00320.2 Alkaloid PMT medium borderline
OBART10G00350.1 Alkaloid PMT medium pass
OBART10G00400.2 Alkaloid PMT medium pass
OBART10G00410.1 Alkaloid PMT medium pass
OBART10G00970.1 Alkaloid PMT medium pass