PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

2196
Candidate Protein Records
1727
Pathway-Level Records
4621
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OBART03G26290.1 Alkaloid T3O low borderline
OBART03G28200.1 Alkaloid T3O medium pass
OBART03G28210.1 Alkaloid T3O medium pass
OBART03G34950.2 Alkaloid T3O medium borderline
OBART03G35390.1 Alkaloid T3O low borderline
OBART03G40080.1 Alkaloid T3O medium pass
OBART03G41040.1 Alkaloid T3O medium borderline
OBART04G00070.1 Alkaloid T3O medium borderline
OBART04G01550.1 Alkaloid T3O low borderline
OBART04G02870.1 Alkaloid T3O medium borderline
OBART04G02940.1 Alkaloid T3O medium borderline
OBART04G11620.1 Alkaloid T3O medium borderline
OBART04G16250.1 Alkaloid T3O medium borderline
OBART04G16260.1 Alkaloid T3O medium borderline
OBART04G22110.1 Alkaloid T3O medium pass
OBART05G05430.1 Alkaloid T3O medium pass
OBART05G06410.1 Alkaloid T3O medium pass
OBART05G14670.1 Alkaloid T3O medium pass
OBART05G17120.1 Alkaloid T3O medium borderline
OBART05G18300.1 Alkaloid T3O low borderline
OBART05G20560.1 Alkaloid T3O medium pass
OBART05G21360.1 Alkaloid T3O medium borderline
OBART06G00620.1 Alkaloid T3O medium pass
OBART06G12960.1 Alkaloid T3O medium borderline
OBART06G13110.1 Alkaloid T3O medium borderline
OBART06G14120.1 Alkaloid T3O medium borderline
OBART06G15950.1 Alkaloid T3O medium borderline
OBART06G16210.1 Alkaloid T3O medium borderline
OBART06G18780.1 Alkaloid T3O medium pass
OBART06G18820.1 Alkaloid T3O low borderline
OBART06G18970.1 Alkaloid T3O low borderline
OBART06G20970.1 Alkaloid T3O medium borderline
OBART06G22400.1 Alkaloid T3O medium borderline
OBART06G22430.1 Alkaloid T3O medium borderline
OBART06G24350.1 Alkaloid T3O medium borderline
OBART07G07320.1 Alkaloid T3O medium borderline
OBART07G07340.1 Alkaloid T3O medium borderline
OBART07G10620.1 Alkaloid T3O medium borderline
OBART07G10670.1 Alkaloid T3O medium borderline
OBART07G14860.1 Alkaloid T3O medium pass
OBART07G16320.1 Alkaloid T3O medium pass
OBART07G16340.1 Alkaloid T3O medium pass
OBART07G16370.1 Alkaloid T3O medium pass
OBART07G16380.1 Alkaloid T3O medium pass
OBART07G16380.2 Alkaloid T3O medium pass
OBART07G16400.1 Alkaloid T3O medium pass
OBART07G16400.2 Alkaloid T3O medium pass
OBART07G16400.3 Alkaloid T3O medium pass
OBART07G16410.1 Alkaloid T3O medium pass
OBART07G21420.1 Alkaloid T3O medium borderline