PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

2196
Candidate Protein Records
1727
Pathway-Level Records
4621
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OBART11G13010.1 Rosmarinic Acid C4H low borderline
OBART11G13110.1 Rosmarinic Acid C4H medium pass
OBART11G13630.1 Rosmarinic Acid C4H low borderline
OBART12G01000.1 Rosmarinic Acid C4H low borderline
OBART12G01000.2 Rosmarinic Acid C4H low borderline
OBART12G01000.3 Rosmarinic Acid C4H low borderline
OBART12G02340.1 Rosmarinic Acid C4H low borderline
OBART12G05550.1 Rosmarinic Acid C4H low borderline
OBART12G07920.1 Rosmarinic Acid C4H medium pass
OBART12G08870.1 Rosmarinic Acid C4H low borderline
OBART12G13570.1 Rosmarinic Acid C4H low borderline
OBART12G17050.1 Rosmarinic Acid C4H medium pass
OBART12G17060.1 Rosmarinic Acid C4H medium pass
OBART12G20240.1 Rosmarinic Acid C4H low borderline
OBART01G29940.1 Rosmarinic Acid CPR low borderline
OBART01G29940.2 Rosmarinic Acid CPR low borderline
OBART01G36840.1 Rosmarinic Acid CPR medium pass
OBART02G00340.1 Rosmarinic Acid CPR low borderline
OBART04G27830.1 Rosmarinic Acid CPR medium pass
OBART04G27830.2 Rosmarinic Acid CPR medium pass
OBART05G12760.1 Rosmarinic Acid CPR medium pass
OBART08G01550.1 Rosmarinic Acid CPR low borderline
OBART08G07350.1 Rosmarinic Acid CPR medium pass
OBART08G22230.1 Rosmarinic Acid CPR low borderline
OBART08G22230.2 Rosmarinic Acid CPR low borderline
OBART09G19450.1 Rosmarinic Acid CPR medium pass
OBART12G19540.1 Rosmarinic Acid CPR low borderline
OBART12G19540.2 Rosmarinic Acid CPR low borderline
OBART01G08080.1 Rosmarinic Acid HPPR medium pass
OBART04G00240.2 Rosmarinic Acid HPPR medium pass
OBART04G00240.3 Rosmarinic Acid HPPR medium pass
OBART04G00240.4 Rosmarinic Acid HPPR medium pass
OBART04G00320.1 Rosmarinic Acid HPPR medium pass
OBART04G00330.1 Rosmarinic Acid HPPR medium pass
OBART04G00330.2 Rosmarinic Acid HPPR medium pass
OBART02G24730.1 Rosmarinic Acid PAL high pass
OBART02G24760.1 Rosmarinic Acid PAL high pass
OBART02G24770.1 Rosmarinic Acid PAL high pass
OBART02G24780.1 Rosmarinic Acid PAL high pass
OBART04G18850.1 Rosmarinic Acid PAL high pass
OBART04G18860.1 Rosmarinic Acid PAL low borderline
OBART04G18870.1 Rosmarinic Acid PAL high pass
OBART05G03560.1 Rosmarinic Acid PAL low borderline
OBART05G17310.1 Rosmarinic Acid PAL medium pass
OBART08G10040.1 Rosmarinic Acid PAL low borderline
OBART12G13980.1 Rosmarinic Acid PAL medium pass
OBART12G14000.1 Rosmarinic Acid PAL high pass
OBART01G00390.1 Rosmarinic Acid RAS medium pass
OBART01G05110.1 Rosmarinic Acid RAS low borderline
OBART01G05570.1 Rosmarinic Acid RAS medium pass