PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Protein/Isoform Record Pathway Family Confidence Status
Oruf11G0002840.2 Flavonoid 4CL low borderline
Oruf11G0004270.1 Flavonoid 4CL low borderline
Oruf11G0017940.1 Flavonoid 4CL low borderline
Oruf11G0017940.2 Flavonoid 4CL low borderline
Oruf12G0003060.1 Flavonoid 4CL low borderline
Oruf12G0003060.2 Flavonoid 4CL low borderline
Oruf12G0003060.3 Flavonoid 4CL low borderline
Oruf12G0004750.1 Flavonoid 4CL medium pass
Oruf12G0004750.2 Flavonoid 4CL medium pass
Oruf12G0004750.3 Flavonoid 4CL medium pass
Oruf01G0015820.1 Phenylpropanoid 4CL medium pass
Oruf01G0026510.1 Phenylpropanoid 4CL low borderline
Oruf01G0027720.1 Phenylpropanoid 4CL low borderline
Oruf01G0027720.2 Phenylpropanoid 4CL low borderline
Oruf01G0029350.1 Phenylpropanoid 4CL low borderline
Oruf01G0034670.1 Phenylpropanoid 4CL low borderline
Oruf01G0034670.2 Phenylpropanoid 4CL low borderline
Oruf01G0034670.3 Phenylpropanoid 4CL low borderline
Oruf01G0043680.1 Phenylpropanoid 4CL medium pass
Oruf01G0043680.2 Phenylpropanoid 4CL medium pass
Oruf01G0043680.3 Phenylpropanoid 4CL medium pass
Oruf01G0043680.4 Phenylpropanoid 4CL medium pass
Oruf02G0001410.1 Phenylpropanoid 4CL medium pass
Oruf02G0005950.1 Phenylpropanoid 4CL medium pass
Oruf02G0019590.1 Phenylpropanoid 4CL low borderline
Oruf02G0030250.1 Phenylpropanoid 4CL medium pass
Oruf02G0039050.1 Phenylpropanoid 4CL low borderline
Oruf03G0002130.1 Phenylpropanoid 4CL medium pass
Oruf03G0002290.1 Phenylpropanoid 4CL medium pass
Oruf03G0002410.1 Phenylpropanoid 4CL low borderline
Oruf03G0003750.1 Phenylpropanoid 4CL medium pass
Oruf03G0015040.1 Phenylpropanoid 4CL medium pass
Oruf03G0015040.2 Phenylpropanoid 4CL medium pass
Oruf03G0015040.3 Phenylpropanoid 4CL medium pass
Oruf03G0042290.1 Phenylpropanoid 4CL low borderline
Oruf03G0042290.2 Phenylpropanoid 4CL low borderline
Oruf04G0008240.1 Phenylpropanoid 4CL medium pass
Oruf04G0012560.1 Phenylpropanoid 4CL low borderline
Oruf04G0012560.2 Phenylpropanoid 4CL low borderline
Oruf04G0027350.1 Phenylpropanoid 4CL low borderline
Oruf04G0030890.1 Phenylpropanoid 4CL medium pass
Oruf04G0031540.1 Phenylpropanoid 4CL medium pass
Oruf05G0002360.1 Phenylpropanoid 4CL low borderline
Oruf05G0002360.2 Phenylpropanoid 4CL low borderline
Oruf05G0012100.1 Phenylpropanoid 4CL low borderline
Oruf05G0012100.2 Phenylpropanoid 4CL low borderline
Oruf06G0003870.1 Phenylpropanoid 4CL low borderline
Oruf06G0003870.2 Phenylpropanoid 4CL low borderline
Oruf06G0003870.3 Phenylpropanoid 4CL low borderline
Oruf06G0009610.1 Phenylpropanoid 4CL medium pass