PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 28.78% Alkaloid pathway 24.3% Flavonoid pathway 15.98% Phenylpropanoid pathway 15.71% Rosmarinic acid pathway 8.05% Steroid pathway 7.18%
Family Distribution
C4H 6.5% C3'H/CYP98A 5.86% BAHD 5.8% UGT 4.19% 7DLGT 3.93% UFGT 3.87% 4CL 3.59% T3O 3.47%
Other Families 62.79%
More Families (97)
CYP76 167 3.33% IFS 151 3.01% POD 134 2.67% NMT 129 2.57% F3'H/CYP75B 126 2.51% BR6OX2/CYP85A2 118 2.35% STR 110 2.19% DWF4/CYP90B1 104 2.07% F3H 92 1.83% CYP71 87 1.73% SMT1/SMT2/SMT3 79 1.58% CAS 70 1.4% CAD 68 1.36% SGD 64 1.28% TPS 62 1.24% PYKS 56 1.12% GES 55 1.1% G8O/G8H 54 1.08% CSE 51 1.02% SLS 50 1.0% CODM/T6ODM 49 0.98% CCR 48 0.96% TRI/TRII 47 0.94% IFR 44 0.88% COMT 44 0.88% FNS 42 0.84% PMT 41 0.82% HCT 40 0.8% RAS 40 0.8% T16H 39 0.78% PAL 39 0.78% LAC 38 0.76% H6H 36 0.72% F3'5'H/CYP75A 36 0.72% CHS 35 0.7% CYP90D1 35 0.7% F5H/CYP84A 34 0.68% NCS 33 0.66% 16OMT 33 0.66% DFR 32 0.64% ANR 30 0.6% CPD/CYP90A1 29 0.58% CYP51G1 29 0.58% GS 28 0.56% BR6OX1/CYP85A1 26 0.52% BBE 20 0.4% IO 20 0.4% CNMT 19 0.38% COR 19 0.38% 8HGO 17 0.34% TAT 17 0.34% MPO 15 0.3% ANS/LDOX 14 0.28% ROT3/CYP90C1 14 0.28% 7DLH 12 0.24% CPR 12 0.24% FPPS 12 0.24% LAMT 11 0.22% SQS/FDFT1 11 0.22% GGPPS 11 0.22% MVK 11 0.22% CYP80B1 10 0.2% CHI 10 0.2% TYDC_DDC 9 0.18% XMT_MXMT_DXMT 9 0.18% CCoAOMT 9 0.18% AACT 9 0.18% SMO1/SMO2 8 0.16% CYP719 7 0.14% HPPR 6 0.12% ADC 5 0.1% FLS 5 0.1% HYD1 5 0.1% MVD 5 0.1% DXS 5 0.1% ODC 4 0.08% TDC 4 0.08% CPI1 4 0.08% MCT/IspD 4 0.08% MDS/IspF 4 0.08% HMGR 4 0.08% PMK 4 0.08% CYP80F1 3 0.06% ISY 3 0.06% SQE 3 0.06% DWF1 3 0.06% IDI 3 0.06% DET2 2 0.04% FK 2 0.04% DWF5 2 0.04% HMGS 2 0.04% HDR/IspH 2 0.04% 6OMT_4OMT_SOMT 1 0.02% DWF7 1 0.02% DXR 1 0.02% CMK/IspE 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Oruf11G0012810.1 Terpenoid UGT medium pass UGT__00081__sp_Q9C768_U76B1_ARATH
Oruf11G0012900.1 Terpenoid UGT medium pass UGT__00031__sp_F8WKW0_UGT1_GARJA
Oruf11G0013320.1 Terpenoid UGT medium pass UGT__00114__sp_U3THC0_FG2KI_SOYBN
Oruf11G0013330.1 Terpenoid UGT medium pass UGT__00037__sp_I1LCI8_FG2KO_SOYBN
Oruf11G0013500.1 Terpenoid UGT medium pass UGT__00037__sp_I1LCI8_FG2KO_SOYBN
Oruf11G0020160.1 Terpenoid UGT medium pass UGT__00092__sp_Q9LNI1_U72B3_ARATH
Oruf11G0023120.1 Terpenoid UGT medium pass UGT__00024__sp_B3VI56_U91D2_STERE
Oruf12G0011430.1 Terpenoid UGT low borderline UGT__00110__sp_Q9ZQ95_U73C6_ARATH
Oruf12G0017420.1 Terpenoid UGT low borderline UGT__00024__sp_B3VI56_U91D2_STERE
Oruf12G0020640.1 Terpenoid UGT medium pass UGT__00110__sp_Q9ZQ95_U73C6_ARATH