PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Oruf01G0012590.2 Phenylpropanoid CCR medium borderline
Oruf01G0012590.3 Phenylpropanoid CCR low borderline
Oruf01G0012590.4 Phenylpropanoid CCR medium pass
Oruf01G0012590.5 Phenylpropanoid CCR medium borderline
Oruf01G0012590.6 Phenylpropanoid CCR medium borderline
Oruf01G0012590.7 Phenylpropanoid CCR medium pass
Oruf01G0026340.1 Phenylpropanoid CCR medium borderline
Oruf01G0026720.1 Phenylpropanoid CCR medium pass
Oruf01G0038860.1 Phenylpropanoid CCR medium borderline
Oruf01G0049060.1 Phenylpropanoid CCR medium borderline
Oruf02G0006240.1 Phenylpropanoid CCR medium borderline
Oruf02G0037970.1 Phenylpropanoid CCR medium borderline
Oruf02G0038150.1 Phenylpropanoid CCR medium borderline
Oruf02G0038160.1 Phenylpropanoid CCR medium pass
Oruf02G0038170.1 Phenylpropanoid CCR low borderline
Oruf02G0038170.2 Phenylpropanoid CCR low borderline
Oruf02G0038170.3 Phenylpropanoid CCR low borderline
Oruf02G0038170.4 Phenylpropanoid CCR low borderline
Oruf02G0038170.5 Phenylpropanoid CCR medium pass
Oruf03G0017920.1 Phenylpropanoid CCR low borderline
Oruf05G0028580.1 Phenylpropanoid CCR medium pass
Oruf05G0028580.2 Phenylpropanoid CCR medium pass
Oruf06G0022680.1 Phenylpropanoid CCR low borderline
Oruf06G0022700.1 Phenylpropanoid CCR medium borderline
Oruf06G0024400.2 Phenylpropanoid CCR low borderline
Oruf06G0024400.3 Phenylpropanoid CCR low borderline
Oruf06G0024400.4 Phenylpropanoid CCR low borderline
Oruf06G0024400.5 Phenylpropanoid CCR low borderline
Oruf06G0024400.6 Phenylpropanoid CCR medium pass
Oruf07G0021850.1 Phenylpropanoid CCR medium borderline
Oruf08G0005510.1 Phenylpropanoid CCR medium borderline
Oruf08G0005510.2 Phenylpropanoid CCR medium borderline
Oruf08G0005510.3 Phenylpropanoid CCR medium borderline
Oruf08G0009870.1 Phenylpropanoid CCR medium borderline
Oruf08G0017940.1 Phenylpropanoid CCR medium borderline
Oruf09G0001240.1 Phenylpropanoid CCR medium borderline
Oruf09G0003010.1 Phenylpropanoid CCR medium borderline
Oruf09G0003140.1 Phenylpropanoid CCR medium borderline
Oruf09G0011030.1 Phenylpropanoid CCR medium borderline
Oruf09G0015920.1 Phenylpropanoid CCR low borderline
Oruf09G0015920.2 Phenylpropanoid CCR low borderline
Oruf09G0015920.3 Phenylpropanoid CCR low borderline
Oruf09G0015920.4 Phenylpropanoid CCR low borderline
Oruf09G0015990.2 Phenylpropanoid CCR low borderline
Oruf10G0002470.1 Phenylpropanoid CCR low borderline
Oruf10G0013910.1 Phenylpropanoid CCR low borderline
Oruf01G0013980.1 Phenylpropanoid CCoAOMT low borderline
Oruf06G0004360.1 Phenylpropanoid CCoAOMT medium pass
Oruf08G0003540.1 Phenylpropanoid CCoAOMT medium pass
Oruf08G0021410.1 Phenylpropanoid CCoAOMT medium pass