PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Oruf04G0003560.1 Phenylpropanoid CAD low borderline
Oruf04G0005660.1 Phenylpropanoid CAD medium pass
Oruf04G0008940.1 Phenylpropanoid CAD low borderline
Oruf04G0008950.1 Phenylpropanoid CAD medium pass
Oruf04G0008990.1 Phenylpropanoid CAD low borderline
Oruf04G0009030.1 Phenylpropanoid CAD low borderline
Oruf04G0009080.1 Phenylpropanoid CAD low borderline
Oruf04G0009110.1 Phenylpropanoid CAD low borderline
Oruf04G0009140.1 Phenylpropanoid CAD low borderline
Oruf04G0009160.1 Phenylpropanoid CAD low borderline
Oruf04G0009170.1 Phenylpropanoid CAD low borderline
Oruf04G0009190.1 Phenylpropanoid CAD low borderline
Oruf04G0009200.1 Phenylpropanoid CAD low borderline
Oruf04G0009900.1 Phenylpropanoid CAD low borderline
Oruf04G0009940.1 Phenylpropanoid CAD low borderline
Oruf04G0026420.1 Phenylpropanoid CAD low borderline
Oruf04G0026420.2 Phenylpropanoid CAD low borderline
Oruf04G0026480.1 Phenylpropanoid CAD medium pass
Oruf04G0027790.1 Phenylpropanoid CAD medium borderline
Oruf04G0027800.1 Phenylpropanoid CAD medium borderline
Oruf05G0011690.1 Phenylpropanoid CAD medium pass
Oruf05G0011690.2 Phenylpropanoid CAD medium pass
Oruf05G0017150.1 Phenylpropanoid CAD low borderline
Oruf06G0015260.1 Phenylpropanoid CAD low borderline
Oruf06G0026620.1 Phenylpropanoid CAD medium borderline
Oruf07G0022070.1 Phenylpropanoid CAD low borderline
Oruf07G0022070.2 Phenylpropanoid CAD low borderline
Oruf07G0022070.3 Phenylpropanoid CAD low borderline
Oruf08G0000690.1 Phenylpropanoid CAD low borderline
Oruf08G0002740.1 Phenylpropanoid CAD low borderline
Oruf08G0009630.1 Phenylpropanoid CAD medium pass
Oruf08G0022720.1 Phenylpropanoid CAD medium borderline
Oruf09G0001480.1 Phenylpropanoid CAD medium pass
Oruf09G0010060.1 Phenylpropanoid CAD low borderline
Oruf09G0010090.1 Phenylpropanoid CAD medium pass
Oruf09G0010110.1 Phenylpropanoid CAD medium pass
Oruf09G0015990.1 Phenylpropanoid CAD low borderline
Oruf10G0002960.1 Phenylpropanoid CAD low borderline
Oruf10G0004970.1 Phenylpropanoid CAD medium pass
Oruf10G0004970.2 Phenylpropanoid CAD medium pass
Oruf10G0011110.1 Phenylpropanoid CAD medium pass
Oruf10G0020620.1 Phenylpropanoid CAD low borderline
Oruf11G0006490.1 Phenylpropanoid CAD low borderline
Oruf11G0006500.1 Phenylpropanoid CAD low borderline
Oruf11G0006510.1 Phenylpropanoid CAD low borderline
Oruf11G0021630.1 Phenylpropanoid CAD medium pass
Oruf12G0013630.1 Phenylpropanoid CAD low borderline
Oruf12G0013770.1 Phenylpropanoid CAD low borderline
Oruf01G0001850.1 Phenylpropanoid CCR medium borderline
Oruf01G0012590.1 Phenylpropanoid CCR medium borderline