PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Oruf12G0018760.1 Phenylpropanoid C3'H/CYP98A medium borderline
Oruf12G0018820.1 Phenylpropanoid C3'H/CYP98A medium borderline
Oruf12G0018830.1 Phenylpropanoid C3'H/CYP98A low borderline
Oruf12G0022410.1 Phenylpropanoid C3'H/CYP98A medium borderline
Oruf01G0007620.1 Phenylpropanoid C4H/CYP73A low borderline
Oruf01G0030600.1 Phenylpropanoid C4H/CYP73A medium borderline
Oruf01G0038280.1 Phenylpropanoid C4H/CYP73A medium pass
Oruf02G0000850.1 Phenylpropanoid C4H/CYP73A low borderline
Oruf02G0006520.1 Phenylpropanoid C4H/CYP73A low borderline
Oruf02G0006560.1 Phenylpropanoid C4H/CYP73A low borderline
Oruf02G0016580.1 Phenylpropanoid C4H/CYP73A medium borderline
Oruf02G0016600.1 Phenylpropanoid C4H/CYP73A low borderline
Oruf02G0018230.1 Phenylpropanoid C4H/CYP73A low borderline
Oruf03G0025380.1 Phenylpropanoid C4H/CYP73A low borderline
Oruf05G0012400.1 Phenylpropanoid C4H/CYP73A medium borderline
Oruf05G0023830.1 Phenylpropanoid C4H/CYP73A low borderline
Oruf06G0019860.1 Phenylpropanoid C4H/CYP73A medium borderline
Oruf06G0019860.2 Phenylpropanoid C4H/CYP73A medium borderline
Oruf06G0019880.1 Phenylpropanoid C4H/CYP73A medium borderline
Oruf06G0019880.2 Phenylpropanoid C4H/CYP73A medium borderline
Oruf06G0019880.3 Phenylpropanoid C4H/CYP73A medium borderline
Oruf06G0019880.4 Phenylpropanoid C4H/CYP73A medium borderline
Oruf06G0019890.1 Phenylpropanoid C4H/CYP73A medium borderline
Oruf06G0019890.2 Phenylpropanoid C4H/CYP73A medium borderline
Oruf07G0007320.1 Phenylpropanoid C4H/CYP73A low borderline
Oruf07G0025260.1 Phenylpropanoid C4H/CYP73A medium borderline
Oruf08G0012910.1 Phenylpropanoid C4H/CYP73A low borderline
Oruf08G0012910.2 Phenylpropanoid C4H/CYP73A low borderline
Oruf10G0002140.1 Phenylpropanoid C4H/CYP73A medium borderline
Oruf12G0002660.1 Phenylpropanoid C4H/CYP73A medium borderline
Oruf01G0015460.1 Phenylpropanoid CAD low borderline
Oruf01G0020190.1 Phenylpropanoid CAD medium borderline
Oruf02G0006740.1 Phenylpropanoid CAD medium pass
Oruf02G0016020.1 Phenylpropanoid CAD low borderline
Oruf02G0022200.2 Phenylpropanoid CAD low borderline
Oruf02G0022200.3 Phenylpropanoid CAD low borderline
Oruf02G0022200.4 Phenylpropanoid CAD low borderline
Oruf02G0022260.1 Phenylpropanoid CAD low borderline
Oruf03G0006040.1 Phenylpropanoid CAD low borderline
Oruf03G0008980.1 Phenylpropanoid CAD medium pass
Oruf03G0017770.1 Phenylpropanoid CAD low borderline
Oruf03G0017770.2 Phenylpropanoid CAD low borderline
Oruf03G0017780.1 Phenylpropanoid CAD low borderline
Oruf03G0018820.1 Phenylpropanoid CAD medium pass
Oruf03G0018830.1 Phenylpropanoid CAD low borderline
Oruf03G0018850.1 Phenylpropanoid CAD low borderline
Oruf03G0018870.1 Phenylpropanoid CAD low borderline
Oruf03G0022740.1 Phenylpropanoid CAD low borderline
Oruf03G0022740.2 Phenylpropanoid CAD low borderline
Oruf04G0000460.1 Phenylpropanoid CAD low borderline