PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Oruf12G0013630.1 Alkaloid GES medium pass
Oruf01G0033980.1 Alkaloid GS low borderline
Oruf02G0006740.1 Alkaloid GS high pass
Oruf02G0021980.1 Alkaloid GS low borderline
Oruf03G0000200.1 Alkaloid GS low borderline
Oruf03G0008980.1 Alkaloid GS high pass
Oruf04G0000370.1 Alkaloid GS low borderline
Oruf04G0005660.1 Alkaloid GS high pass
Oruf04G0009900.1 Alkaloid GS low borderline
Oruf04G0009940.1 Alkaloid GS low borderline
Oruf04G0010440.1 Alkaloid GS low borderline
Oruf04G0026480.1 Alkaloid GS high pass
Oruf05G0011880.1 Alkaloid GS low borderline
Oruf08G0000690.1 Alkaloid GS medium pass
Oruf08G0009630.1 Alkaloid GS high pass
Oruf08G0014610.1 Alkaloid GS low borderline
Oruf08G0024780.1 Alkaloid GS medium pass
Oruf09G0001480.1 Alkaloid GS medium pass
Oruf09G0010060.1 Alkaloid GS medium pass
Oruf09G0010090.1 Alkaloid GS medium pass
Oruf09G0010110.1 Alkaloid GS high pass
Oruf09G0016540.1 Alkaloid GS low borderline
Oruf09G0016580.1 Alkaloid GS low borderline
Oruf09G0016590.1 Alkaloid GS low borderline
Oruf10G0004970.1 Alkaloid GS high pass
Oruf10G0004970.2 Alkaloid GS high pass
Oruf10G0011110.1 Alkaloid GS high pass
Oruf10G0019540.1 Alkaloid GS low borderline
Oruf11G0021630.1 Alkaloid GS high pass
Oruf01G0015250.1 Alkaloid H6H low borderline
Oruf01G0033370.1 Alkaloid H6H low borderline
Oruf01G0039040.1 Alkaloid H6H low borderline
Oruf01G0039170.1 Alkaloid H6H medium borderline
Oruf01G0042540.1 Alkaloid H6H high pass
Oruf01G0046190.1 Alkaloid H6H medium borderline
Oruf02G0023500.1 Alkaloid H6H low borderline
Oruf02G0035420.1 Alkaloid H6H medium borderline
Oruf03G0023240.1 Alkaloid H6H medium borderline
Oruf03G0031280.1 Alkaloid H6H medium borderline
Oruf04G0003670.1 Alkaloid H6H medium borderline
Oruf04G0012700.1 Alkaloid H6H low borderline
Oruf04G0029850.1 Alkaloid H6H high pass
Oruf05G0003420.1 Alkaloid H6H low borderline
Oruf05G0007280.3 Alkaloid H6H low borderline
Oruf05G0017950.1 Alkaloid H6H medium pass
Oruf05G0023790.1 Alkaloid H6H low borderline
Oruf05G0028450.1 Alkaloid H6H low borderline
Oruf07G0000310.1 Alkaloid H6H medium pass
Oruf07G0004150.1 Alkaloid H6H medium borderline
Oruf07G0004150.2 Alkaloid H6H medium pass