PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Oruf08G0008790.1 Alkaloid H6H medium borderline
Oruf08G0015130.1 Alkaloid H6H low borderline
Oruf08G0015170.1 Alkaloid H6H low borderline
Oruf08G0016460.1 Alkaloid H6H low borderline
Oruf08G0016470.1 Alkaloid H6H low borderline
Oruf09G0002120.1 Alkaloid H6H low borderline
Oruf09G0002270.1 Alkaloid H6H low borderline
Oruf09G0002270.2 Alkaloid H6H low borderline
Oruf09G0002270.3 Alkaloid H6H low borderline
Oruf09G0002270.4 Alkaloid H6H low borderline
Oruf09G0013150.1 Alkaloid H6H low borderline
Oruf10G0005500.1 Alkaloid H6H low borderline
Oruf10G0017860.1 Alkaloid H6H medium borderline
Oruf10G0019390.1 Alkaloid H6H medium borderline
Oruf11G0009610.1 Alkaloid H6H low borderline
Oruf01G0030600.1 Alkaloid IO medium borderline
Oruf01G0038280.1 Alkaloid IO medium borderline
Oruf02G0008920.1 Alkaloid IO low borderline
Oruf02G0016580.1 Alkaloid IO medium pass
Oruf02G0028900.1 Alkaloid IO low borderline
Oruf03G0024110.1 Alkaloid IO medium pass
Oruf03G0036190.3 Alkaloid IO medium borderline
Oruf04G0006250.1 Alkaloid IO medium borderline
Oruf04G0012710.1 Alkaloid IO medium borderline
Oruf04G0017480.1 Alkaloid IO medium borderline
Oruf05G0000130.1 Alkaloid IO low borderline
Oruf06G0006810.1 Alkaloid IO medium pass
Oruf07G0021630.2 Alkaloid IO medium borderline
Oruf08G0002190.1 Alkaloid IO medium borderline
Oruf08G0009390.1 Alkaloid IO low borderline
Oruf08G0024980.1 Alkaloid IO medium borderline
Oruf10G0003650.1 Alkaloid IO medium borderline
Oruf10G0007390.1 Alkaloid IO medium borderline
Oruf12G0002660.1 Alkaloid IO medium pass
Oruf12G0018760.1 Alkaloid IO medium borderline
Oruf03G0022400.1 Alkaloid ISY medium pass
Oruf03G0023090.1 Alkaloid ISY medium pass
Oruf07G0022080.1 Alkaloid ISY medium pass
Oruf02G0031870.1 Alkaloid LAMT medium borderline
Oruf04G0030060.1 Alkaloid LAMT medium borderline
Oruf06G0012960.1 Alkaloid LAMT medium borderline
Oruf06G0013010.1 Alkaloid LAMT medium borderline
Oruf06G0013920.1 Alkaloid LAMT medium borderline
Oruf06G0013920.2 Alkaloid LAMT medium borderline
Oruf11G0009040.1 Alkaloid LAMT medium borderline
Oruf11G0009050.1 Alkaloid LAMT medium borderline
Oruf11G0009070.1 Alkaloid LAMT medium borderline
Oruf11G0009160.1 Alkaloid LAMT medium borderline
Oruf11G0009170.1 Alkaloid LAMT medium pass
Oruf02G0023590.1 Alkaloid MPO high pass