PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Oruf02G0023590.2 Alkaloid MPO high pass
Oruf04G0001900.1 Alkaloid MPO medium pass
Oruf04G0001910.1 Alkaloid MPO high pass
Oruf04G0001920.1 Alkaloid MPO medium pass
Oruf04G0001930.1 Alkaloid MPO medium pass
Oruf04G0006540.1 Alkaloid MPO medium pass
Oruf04G0017250.1 Alkaloid MPO high pass
Oruf06G0014390.1 Alkaloid MPO low borderline
Oruf06G0014390.2 Alkaloid MPO low borderline
Oruf06G0014390.3 Alkaloid MPO medium pass
Oruf06G0014390.4 Alkaloid MPO low borderline
Oruf06G0014400.1 Alkaloid MPO medium pass
Oruf06G0014400.2 Alkaloid MPO medium pass
Oruf07G0020020.1 Alkaloid MPO medium pass
Oruf01G0006180.1 Alkaloid NCS medium borderline
Oruf01G0006180.2 Alkaloid NCS medium borderline
Oruf03G0043030.1 Alkaloid NCS medium borderline
Oruf04G0017210.1 Alkaloid NCS medium borderline
Oruf04G0024350.1 Alkaloid NCS medium borderline
Oruf04G0024350.2 Alkaloid NCS medium borderline
Oruf04G0025170.1 Alkaloid NCS medium pass
Oruf04G0025180.1 Alkaloid NCS medium pass
Oruf04G0028560.1 Alkaloid NCS medium borderline
Oruf04G0030210.1 Alkaloid NCS medium borderline
Oruf04G0030240.1 Alkaloid NCS medium borderline
Oruf06G0005050.1 Alkaloid NCS medium borderline
Oruf06G0010000.1 Alkaloid NCS medium borderline
Oruf09G0006540.1 Alkaloid NCS low borderline
Oruf09G0007430.1 Alkaloid NCS medium borderline
Oruf09G0007450.1 Alkaloid NCS medium borderline
Oruf09G0013150.2 Alkaloid NCS medium borderline
Oruf09G0013150.3 Alkaloid NCS medium borderline
Oruf10G0017130.1 Alkaloid NCS medium borderline
Oruf10G0017130.2 Alkaloid NCS medium borderline
Oruf10G0017130.3 Alkaloid NCS medium borderline
Oruf10G0017130.4 Alkaloid NCS medium borderline
Oruf10G0017130.5 Alkaloid NCS medium borderline
Oruf10G0017130.6 Alkaloid NCS medium borderline
Oruf10G0017130.7 Alkaloid NCS medium borderline
Oruf10G0017130.8 Alkaloid NCS medium borderline
Oruf10G0019320.1 Alkaloid NCS medium borderline
Oruf10G0019330.1 Alkaloid NCS medium borderline
Oruf10G0019350.1 Alkaloid NCS medium borderline
Oruf10G0019360.1 Alkaloid NCS medium borderline
Oruf10G0019360.2 Alkaloid NCS medium borderline
Oruf11G0005200.1 Alkaloid NCS medium borderline
Oruf11G0021240.1 Alkaloid NCS low borderline
Oruf01G0005830.1 Alkaloid NMT low borderline
Oruf01G0008000.1 Alkaloid NMT low borderline
Oruf01G0027680.1 Alkaloid NMT low borderline