PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Oruf05G0022800.1 Flavonoid UFGT medium pass
Oruf05G0022800.2 Flavonoid UFGT medium pass
Oruf05G0024600.1 Flavonoid UFGT medium pass
Oruf05G0024610.1 Flavonoid UFGT high pass
Oruf05G0024630.1 Flavonoid UFGT high pass
Oruf05G0024640.1 Flavonoid UFGT medium pass
Oruf05G0024650.1 Flavonoid UFGT medium pass
Oruf05G0024660.1 Flavonoid UFGT medium pass
Oruf05G0024680.1 Flavonoid UFGT medium pass
Oruf05G0026540.1 Flavonoid UFGT medium pass
Oruf06G0005830.1 Flavonoid UFGT low borderline
Oruf06G0005840.1 Flavonoid UFGT high pass
Oruf06G0006080.1 Flavonoid UFGT high pass
Oruf06G0007490.8 Flavonoid UFGT medium pass
Oruf06G0007830.1 Flavonoid UFGT medium pass
Oruf06G0010910.1 Flavonoid UFGT medium pass
Oruf06G0011380.1 Flavonoid UFGT medium pass
Oruf06G0011390.1 Flavonoid UFGT medium pass
Oruf06G0011400.1 Flavonoid UFGT medium pass
Oruf06G0011430.1 Flavonoid UFGT medium pass
Oruf06G0011730.1 Flavonoid UFGT high pass
Oruf06G0011780.1 Flavonoid UFGT high pass
Oruf06G0011810.1 Flavonoid UFGT medium pass
Oruf06G0011840.1 Flavonoid UFGT medium pass
Oruf06G0014660.1 Flavonoid UFGT high pass
Oruf06G0020860.1 Flavonoid UFGT high pass
Oruf06G0020870.1 Flavonoid UFGT high pass
Oruf06G0021020.1 Flavonoid UFGT medium pass
Oruf06G0021030.1 Flavonoid UFGT medium pass
Oruf07G0002800.1 Flavonoid UFGT high pass
Oruf07G0006400.1 Flavonoid UFGT high pass
Oruf07G0006400.2 Flavonoid UFGT low borderline
Oruf07G0006430.1 Flavonoid UFGT medium pass
Oruf07G0008440.1 Flavonoid UFGT high pass
Oruf07G0008450.1 Flavonoid UFGT high pass
Oruf07G0008460.1 Flavonoid UFGT medium pass
Oruf07G0008460.2 Flavonoid UFGT medium pass
Oruf07G0008470.1 Flavonoid UFGT high pass
Oruf07G0008570.1 Flavonoid UFGT medium pass
Oruf07G0008950.1 Flavonoid UFGT medium pass
Oruf07G0011840.1 Flavonoid UFGT low borderline
Oruf07G0011840.3 Flavonoid UFGT low borderline
Oruf07G0014860.1 Flavonoid UFGT medium pass
Oruf07G0014870.1 Flavonoid UFGT medium pass
Oruf07G0014910.1 Flavonoid UFGT medium pass
Oruf07G0014950.1 Flavonoid UFGT medium pass
Oruf07G0014970.1 Flavonoid UFGT medium pass
Oruf07G0015760.1 Flavonoid UFGT high pass
Oruf07G0015780.1 Flavonoid UFGT high pass
Oruf07G0015790.1 Flavonoid UFGT medium pass