PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Oruf07G0015820.1 Flavonoid UFGT medium pass
Oruf07G0016240.1 Flavonoid UFGT high pass
Oruf07G0016260.1 Flavonoid UFGT high pass
Oruf07G0019440.1 Flavonoid UFGT high pass
Oruf07G0023570.1 Flavonoid UFGT medium pass
Oruf07G0025910.1 Flavonoid UFGT high pass
Oruf07G0026680.1 Flavonoid UFGT medium pass
Oruf08G0004560.1 Flavonoid UFGT medium pass
Oruf08G0004620.1 Flavonoid UFGT medium pass
Oruf08G0008840.1 Flavonoid UFGT medium pass
Oruf08G0015720.1 Flavonoid UFGT low borderline
Oruf08G0020800.1 Flavonoid UFGT high pass
Oruf08G0020830.1 Flavonoid UFGT medium pass
Oruf09G0000940.1 Flavonoid UFGT medium pass
Oruf09G0001570.1 Flavonoid UFGT low borderline
Oruf09G0006450.1 Flavonoid UFGT high pass
Oruf09G0006460.1 Flavonoid UFGT medium pass
Oruf09G0008900.1 Flavonoid UFGT low borderline
Oruf09G0015270.1 Flavonoid UFGT high pass
Oruf09G0015280.1 Flavonoid UFGT medium pass
Oruf09G0015290.1 Flavonoid UFGT low borderline
Oruf09G0017690.1 Flavonoid UFGT medium pass
Oruf09G0017690.2 Flavonoid UFGT medium pass
Oruf09G0017690.3 Flavonoid UFGT high pass
Oruf09G0017690.5 Flavonoid UFGT medium pass
Oruf10G0000950.1 Flavonoid UFGT high pass
Oruf10G0003440.1 Flavonoid UFGT high pass
Oruf10G0004300.1 Flavonoid UFGT high pass
Oruf10G0005910.1 Flavonoid UFGT high pass
Oruf10G0006390.1 Flavonoid UFGT medium pass
Oruf10G0006400.1 Flavonoid UFGT medium pass
Oruf10G0006410.1 Flavonoid UFGT high pass
Oruf10G0011870.1 Flavonoid UFGT medium pass
Oruf10G0011870.2 Flavonoid UFGT medium pass
Oruf11G0002740.1 Flavonoid UFGT medium pass
Oruf11G0012730.1 Flavonoid UFGT medium pass
Oruf11G0012730.2 Flavonoid UFGT medium pass
Oruf11G0012810.1 Flavonoid UFGT high pass
Oruf11G0012900.1 Flavonoid UFGT high pass
Oruf11G0013320.1 Flavonoid UFGT medium pass
Oruf11G0013330.1 Flavonoid UFGT high pass
Oruf11G0013500.1 Flavonoid UFGT medium pass
Oruf11G0020160.1 Flavonoid UFGT medium pass
Oruf11G0023120.1 Flavonoid UFGT medium pass
Oruf12G0017420.1 Flavonoid UFGT medium pass
Oruf12G0020640.1 Flavonoid UFGT medium pass