PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
Oruf10G0005500.1 Flavonoid ANS/LDOX low borderline
Oruf10G0019360.1 Flavonoid ANS/LDOX medium borderline
Oruf10G0019360.2 Flavonoid ANS/LDOX medium borderline
Oruf11G0012540.1 Flavonoid ANS/LDOX medium borderline
Oruf01G0030600.1 Flavonoid C4H medium borderline
Oruf01G0038280.1 Flavonoid C4H medium pass
Oruf02G0016580.1 Flavonoid C4H medium borderline
Oruf02G0016600.1 Flavonoid C4H low borderline
Oruf05G0012400.1 Flavonoid C4H medium pass
Oruf06G0010610.1 Flavonoid C4H medium borderline
Oruf06G0018480.1 Flavonoid C4H low borderline
Oruf06G0019860.1 Flavonoid C4H medium borderline
Oruf06G0019860.2 Flavonoid C4H medium borderline
Oruf07G0025260.1 Flavonoid C4H medium borderline
Oruf08G0012910.1 Flavonoid C4H low borderline
Oruf08G0012910.2 Flavonoid C4H low borderline
Oruf03G0040430.1 Flavonoid CHI medium pass
Oruf05G0023090.1 Flavonoid CHI low borderline
Oruf06G0006770.3 Flavonoid CHI low borderline
Oruf06G0006770.4 Flavonoid CHI low borderline
Oruf06G0019540.1 Flavonoid CHI low borderline
Oruf06G0019540.2 Flavonoid CHI low borderline
Oruf11G0000980.1 Flavonoid CHI medium pass
Oruf12G0001100.1 Flavonoid CHI medium pass
Oruf12G0001100.2 Flavonoid CHI medium pass
Oruf12G0013700.1 Flavonoid CHI medium pass
Oruf01G0011660.1 Flavonoid CHS low borderline
Oruf01G0016220.1 Flavonoid CHS low borderline
Oruf01G0024300.3 Flavonoid CHS medium borderline
Oruf01G0024300.4 Flavonoid CHS medium borderline
Oruf03G0030090.1 Flavonoid CHS medium pass
Oruf04G0000200.1 Flavonoid CHS medium pass
Oruf04G0008000.1 Flavonoid CHS medium pass
Oruf05G0007560.1 Flavonoid CHS low borderline
Oruf05G0007580.1 Flavonoid CHS medium pass
Oruf07G0009790.1 Flavonoid CHS medium pass
Oruf07G0011510.1 Flavonoid CHS medium pass
Oruf07G0015650.1 Flavonoid CHS medium pass
Oruf07G0015670.1 Flavonoid CHS medium pass
Oruf07G0017130.1 Flavonoid CHS medium pass
Oruf07G0017140.1 Flavonoid CHS medium pass
Oruf07G0017180.1 Flavonoid CHS medium pass
Oruf10G0002890.1 Flavonoid CHS medium pass
Oruf10G0003410.1 Flavonoid CHS medium pass
Oruf10G0003420.1 Flavonoid CHS medium pass
Oruf10G0003840.1 Flavonoid CHS medium pass
Oruf10G0003860.1 Flavonoid CHS medium pass
Oruf10G0003870.1 Flavonoid CHS medium pass
Oruf10G0003880.1 Flavonoid CHS medium pass
Oruf10G0004220.1 Flavonoid CHS medium pass