PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Oruf09G0008670.1 Alkaloid 7DLGT low borderline
Oruf09G0008900.1 Alkaloid 7DLGT low borderline
Oruf09G0009960.1 Alkaloid 7DLGT low borderline
Oruf09G0015270.1 Alkaloid 7DLGT low borderline
Oruf09G0015280.1 Alkaloid 7DLGT low borderline
Oruf09G0015290.1 Alkaloid 7DLGT low borderline
Oruf09G0017690.1 Alkaloid 7DLGT low borderline
Oruf09G0017690.2 Alkaloid 7DLGT low borderline
Oruf09G0017690.3 Alkaloid 7DLGT low borderline
Oruf09G0017690.5 Alkaloid 7DLGT low borderline
Oruf10G0000950.1 Alkaloid 7DLGT low borderline
Oruf10G0003440.1 Alkaloid 7DLGT low borderline
Oruf10G0004300.1 Alkaloid 7DLGT medium pass
Oruf10G0005030.1 Alkaloid 7DLGT low borderline
Oruf10G0005910.1 Alkaloid 7DLGT medium pass
Oruf10G0006390.1 Alkaloid 7DLGT low borderline
Oruf10G0006400.1 Alkaloid 7DLGT low borderline
Oruf10G0006410.1 Alkaloid 7DLGT medium pass
Oruf10G0011870.1 Alkaloid 7DLGT low borderline
Oruf10G0011870.2 Alkaloid 7DLGT low borderline
Oruf11G0002740.1 Alkaloid 7DLGT low borderline
Oruf11G0006010.1 Alkaloid 7DLGT low borderline
Oruf11G0012730.1 Alkaloid 7DLGT medium pass
Oruf11G0012730.2 Alkaloid 7DLGT medium pass
Oruf11G0012810.1 Alkaloid 7DLGT medium pass
Oruf11G0012900.1 Alkaloid 7DLGT medium pass
Oruf11G0013330.1 Alkaloid 7DLGT low borderline
Oruf11G0013500.1 Alkaloid 7DLGT low borderline
Oruf11G0020160.1 Alkaloid 7DLGT medium pass
Oruf12G0017420.1 Alkaloid 7DLGT low borderline
Oruf12G0020640.1 Alkaloid 7DLGT low borderline
Oruf01G0026010.4 Alkaloid 7DLH medium borderline
Oruf01G0026030.2 Alkaloid 7DLH medium borderline
Oruf03G0008970.1 Alkaloid 7DLH low borderline
Oruf04G0002880.1 Alkaloid 7DLH low borderline
Oruf06G0006050.1 Alkaloid 7DLH medium borderline
Oruf07G0025100.1 Alkaloid 7DLH low borderline
Oruf10G0018540.3 Alkaloid 7DLH medium borderline
Oruf10G0018540.5 Alkaloid 7DLH medium borderline
Oruf11G0001150.1 Alkaloid 7DLH medium borderline
Oruf11G0002290.1 Alkaloid 7DLH medium borderline
Oruf11G0014350.1 Alkaloid 7DLH low borderline
Oruf12G0001290.4 Alkaloid 7DLH medium borderline
Oruf02G0026500.1 Alkaloid 8HGO medium borderline
Oruf02G0026500.2 Alkaloid 8HGO medium borderline
Oruf02G0038400.1 Alkaloid 8HGO medium borderline
Oruf03G0006400.1 Alkaloid 8HGO medium borderline
Oruf03G0006410.1 Alkaloid 8HGO medium borderline
Oruf03G0008370.1 Alkaloid 8HGO low borderline
Oruf03G0012010.1 Alkaloid 8HGO low borderline