PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Oruf04G0026550.1 Alkaloid 8HGO low borderline
Oruf07G0017930.1 Alkaloid 8HGO low borderline
Oruf07G0017930.2 Alkaloid 8HGO low borderline
Oruf07G0017960.1 Alkaloid 8HGO low borderline
Oruf07G0023530.1 Alkaloid 8HGO medium pass
Oruf10G0002960.1 Alkaloid 8HGO medium borderline
Oruf10G0016360.1 Alkaloid 8HGO low borderline
Oruf11G0006490.1 Alkaloid 8HGO medium borderline
Oruf11G0006500.1 Alkaloid 8HGO medium borderline
Oruf11G0006510.1 Alkaloid 8HGO medium borderline
Oruf03G0027390.1 Alkaloid ADC low borderline
Oruf03G0027390.2 Alkaloid ADC low borderline
Oruf04G0000390.1 Alkaloid ADC medium pass
Oruf06G0001920.1 Alkaloid ADC medium pass
Oruf08G0018140.1 Alkaloid ADC low borderline
Oruf01G0012670.1 Alkaloid BBE low borderline
Oruf01G0025320.2 Alkaloid BBE low borderline
Oruf02G0010000.1 Alkaloid BBE medium borderline
Oruf05G0010740.1 Alkaloid BBE low borderline
Oruf05G0010740.2 Alkaloid BBE low borderline
Oruf05G0013680.1 Alkaloid BBE low borderline
Oruf06G0018750.1 Alkaloid BBE low borderline
Oruf06G0018810.1 Alkaloid BBE medium borderline
Oruf06G0018830.1 Alkaloid BBE medium borderline
Oruf06G0018840.1 Alkaloid BBE medium borderline
Oruf06G0018850.1 Alkaloid BBE medium borderline
Oruf06G0018880.1 Alkaloid BBE medium borderline
Oruf07G0003670.1 Alkaloid BBE low borderline
Oruf07G0003670.2 Alkaloid BBE low borderline
Oruf08G0003860.1 Alkaloid BBE medium borderline
Oruf08G0003870.1 Alkaloid BBE medium borderline
Oruf08G0012740.1 Alkaloid BBE medium borderline
Oruf10G0000300.1 Alkaloid BBE low borderline
Oruf10G0007650.1 Alkaloid BBE medium borderline
Oruf11G0015100.1 Alkaloid BBE medium borderline
Oruf01G0001440.1 Alkaloid CNMT low borderline
Oruf01G0020580.1 Alkaloid CNMT low borderline
Oruf01G0020580.2 Alkaloid CNMT low borderline
Oruf01G0020580.3 Alkaloid CNMT low borderline
Oruf06G0001980.1 Alkaloid CNMT low borderline
Oruf06G0003470.1 Alkaloid CNMT low borderline
Oruf06G0003470.2 Alkaloid CNMT low borderline
Oruf06G0020070.1 Alkaloid CNMT medium borderline
Oruf06G0020070.2 Alkaloid CNMT medium borderline
Oruf07G0004780.1 Alkaloid CNMT low borderline
Oruf07G0011580.1 Alkaloid CNMT low borderline
Oruf07G0011580.3 Alkaloid CNMT low borderline
Oruf07G0011580.4 Alkaloid CNMT low borderline
Oruf07G0014050.1 Alkaloid CNMT medium pass
Oruf11G0017900.1 Alkaloid CNMT low borderline