PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Oruf09G0021710.1 Alkaloid CODM/T6ODM medium borderline
Oruf11G0001640.1 Alkaloid CODM/T6ODM medium borderline
Oruf11G0012540.1 Alkaloid CODM/T6ODM medium borderline
Oruf01G0040180.1 Alkaloid COR medium pass
Oruf01G0040180.2 Alkaloid COR medium pass
Oruf01G0040180.3 Alkaloid COR medium pass
Oruf01G0040180.5 Alkaloid COR medium pass
Oruf01G0040190.1 Alkaloid COR medium pass
Oruf02G0001810.1 Alkaloid COR medium pass
Oruf03G0009930.1 Alkaloid COR medium pass
Oruf04G0003070.1 Alkaloid COR medium pass
Oruf04G0015310.1 Alkaloid COR low borderline
Oruf04G0015310.2 Alkaloid COR low borderline
Oruf04G0015310.3 Alkaloid COR medium pass
Oruf05G0019970.1 Alkaloid COR medium pass
Oruf05G0019980.1 Alkaloid COR medium pass
Oruf05G0021000.5 Alkaloid COR medium pass
Oruf10G0000520.1 Alkaloid COR medium pass
Oruf10G0000530.1 Alkaloid COR medium pass
Oruf10G0000550.1 Alkaloid COR medium pass
Oruf10G0000560.1 Alkaloid COR medium pass
Oruf10G0000590.1 Alkaloid COR medium pass
Oruf02G0009110.1 Alkaloid CYP719 medium borderline
Oruf02G0009110.2 Alkaloid CYP719 medium borderline
Oruf04G0016810.1 Alkaloid CYP719 medium borderline
Oruf05G0023830.1 Alkaloid CYP719 medium borderline
Oruf06G0019830.1 Alkaloid CYP719 medium borderline
Oruf10G0016270.1 Alkaloid CYP719 medium borderline
Oruf10G0016500.1 Alkaloid CYP719 medium borderline
Oruf02G0014650.1 Alkaloid CYP80B1 medium borderline
Oruf04G0001500.1 Alkaloid CYP80B1 medium borderline
Oruf04G0003240.1 Alkaloid CYP80B1 medium borderline
Oruf04G0003240.2 Alkaloid CYP80B1 medium borderline
Oruf04G0003290.1 Alkaloid CYP80B1 medium borderline
Oruf06G0001520.1 Alkaloid CYP80B1 low borderline
Oruf06G0001520.2 Alkaloid CYP80B1 low borderline
Oruf06G0019810.1 Alkaloid CYP80B1 medium borderline
Oruf06G0019810.2 Alkaloid CYP80B1 medium borderline
Oruf07G0019670.1 Alkaloid CYP80B1 medium borderline
Oruf02G0001010.1 Alkaloid CYP80F1 medium borderline
Oruf05G0017550.1 Alkaloid CYP80F1 medium borderline
Oruf07G0019660.1 Alkaloid CYP80F1 medium borderline
Oruf01G0008740.1 Alkaloid G8O/G8H medium borderline
Oruf01G0008750.4 Alkaloid G8O/G8H medium borderline
Oruf01G0021990.1 Alkaloid G8O/G8H medium borderline
Oruf02G0000730.2 Alkaloid G8O/G8H medium borderline
Oruf02G0000730.3 Alkaloid G8O/G8H medium borderline
Oruf02G0006560.1 Alkaloid G8O/G8H medium borderline
Oruf02G0008900.1 Alkaloid G8O/G8H low borderline
Oruf02G0012270.1 Alkaloid G8O/G8H medium borderline