PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Oruf02G0018230.1 Alkaloid G8O/G8H medium pass
Oruf02G0018330.1 Alkaloid G8O/G8H medium borderline
Oruf02G0018330.2 Alkaloid G8O/G8H medium borderline
Oruf02G0018330.3 Alkaloid G8O/G8H medium borderline
Oruf03G0002470.1 Alkaloid G8O/G8H medium borderline
Oruf03G0010850.1 Alkaloid G8O/G8H medium borderline
Oruf03G0025380.1 Alkaloid G8O/G8H medium borderline
Oruf03G0026020.1 Alkaloid G8O/G8H medium borderline
Oruf03G0027060.1 Alkaloid G8O/G8H low borderline
Oruf03G0034810.1 Alkaloid G8O/G8H medium borderline
Oruf03G0036190.1 Alkaloid G8O/G8H medium borderline
Oruf03G0036190.2 Alkaloid G8O/G8H medium borderline
Oruf04G0001530.1 Alkaloid G8O/G8H medium borderline
Oruf05G0012400.1 Alkaloid G8O/G8H low borderline
Oruf06G0010610.1 Alkaloid G8O/G8H medium borderline
Oruf06G0012010.1 Alkaloid G8O/G8H medium borderline
Oruf06G0013850.1 Alkaloid G8O/G8H medium borderline
Oruf06G0018480.1 Alkaloid G8O/G8H low borderline
Oruf06G0019860.1 Alkaloid G8O/G8H medium borderline
Oruf06G0019860.2 Alkaloid G8O/G8H medium borderline
Oruf06G0019880.1 Alkaloid G8O/G8H medium borderline
Oruf06G0019880.2 Alkaloid G8O/G8H medium borderline
Oruf06G0019880.3 Alkaloid G8O/G8H medium borderline
Oruf06G0019880.4 Alkaloid G8O/G8H medium borderline
Oruf06G0019890.1 Alkaloid G8O/G8H medium borderline
Oruf06G0019890.2 Alkaloid G8O/G8H medium borderline
Oruf06G0021280.1 Alkaloid G8O/G8H medium borderline
Oruf07G0007320.1 Alkaloid G8O/G8H medium borderline
Oruf07G0012950.1 Alkaloid G8O/G8H medium borderline
Oruf07G0022200.1 Alkaloid G8O/G8H medium borderline
Oruf08G0000430.1 Alkaloid G8O/G8H medium borderline
Oruf08G0003430.1 Alkaloid G8O/G8H medium borderline
Oruf09G0018860.1 Alkaloid G8O/G8H low borderline
Oruf10G0001950.1 Alkaloid G8O/G8H medium borderline
Oruf10G0002140.1 Alkaloid G8O/G8H medium borderline
Oruf10G0003630.1 Alkaloid G8O/G8H medium pass
Oruf10G0004660.1 Alkaloid G8O/G8H medium borderline
Oruf10G0016560.1 Alkaloid G8O/G8H medium borderline
Oruf10G0016580.1 Alkaloid G8O/G8H medium borderline
Oruf10G0016600.1 Alkaloid G8O/G8H medium borderline
Oruf10G0017260.1 Alkaloid G8O/G8H medium borderline
Oruf11G0002280.1 Alkaloid G8O/G8H low borderline
Oruf11G0014590.1 Alkaloid G8O/G8H medium borderline
Oruf12G0006290.1 Alkaloid G8O/G8H medium borderline
Oruf12G0009770.1 Alkaloid G8O/G8H low borderline
Oruf12G0018830.1 Alkaloid G8O/G8H medium borderline
Oruf01G0015460.1 Alkaloid GES medium pass
Oruf01G0025000.1 Alkaloid GES medium pass
Oruf02G0001630.1 Alkaloid GES medium pass
Oruf02G0012290.1 Alkaloid GES low borderline