PlantSME Plant secondary metabolism enzyme database

Populus tremula (populus_tremula)

Imported from atlas release summary for Populus tremula.

3319
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 927 20 BAHD (456) View species results
Alkaloid pathway 791 24 NMT (188) View species results
Phenylpropanoid pathway 711 13 POD (308) View species results
Flavonoid pathway 335 11 UFGT (164) View species results
Steroid pathway 312 13 CAS (122) View species results
Rosmarinic acid pathway 243 7 4CL (80) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2142 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 662 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Potra179347g28010.1 Alkaloid 16OMT medium borderline
Potra182371g31311.1 Alkaloid 16OMT medium borderline
Potra187787g28536.1 Alkaloid 16OMT medium borderline
Potra000847g06838.3 Alkaloid 6OMT_4OMT_SOMT medium borderline
Potra000847g06838.4 Alkaloid 6OMT_4OMT_SOMT medium borderline
Potra000853g06910.3 Alkaloid 6OMT_4OMT_SOMT medium borderline
Potra000022g00107.1 Alkaloid 7DLGT low borderline
Potra000037g00184.3 Alkaloid 7DLGT low borderline
Potra000324g32132.1 Alkaloid 7DLGT low borderline
Potra000329g01152.1 Alkaloid 7DLGT medium pass
Potra000346g01227.1 Alkaloid 7DLGT low borderline
Potra000352g01299.1 Alkaloid 7DLGT medium pass
Potra000352g01300.1 Alkaloid 7DLGT low borderline
Potra000414g02059.1 Alkaloid 7DLGT low borderline
Potra000414g02059.2 Alkaloid 7DLGT low borderline
Potra000457g32684.1 Alkaloid 7DLGT low borderline
Potra000464g02726.1 Alkaloid 7DLGT high pass
Potra000492g03133.1 Alkaloid 7DLGT medium pass
Potra000501g03230.1 Alkaloid 7DLGT medium pass
Potra000501g03230.2 Alkaloid 7DLGT medium pass
Potra000501g03230.3 Alkaloid 7DLGT medium pass
Potra000508g03320.1 Alkaloid 7DLGT low borderline
Potra000512g03375.1 Alkaloid 7DLGT low borderline
Potra000630g04817.1 Alkaloid 7DLGT low borderline
Potra000686g05317.1 Alkaloid 7DLGT medium pass
Potra000686g05318.1 Alkaloid 7DLGT medium pass
Potra000686g05323.1 Alkaloid 7DLGT medium pass
Potra000686g33188.1 Alkaloid 7DLGT low borderline
Potra000686g33189.1 Alkaloid 7DLGT low borderline
Potra000704g05507.1 Alkaloid 7DLGT low borderline
Potra000737g05809.1 Alkaloid 7DLGT medium pass
Potra000763g06034.1 Alkaloid 7DLGT medium pass
Potra000763g33319.1 Alkaloid 7DLGT medium pass
Potra000809g06443.1 Alkaloid 7DLGT medium pass
Potra000824g06572.1 Alkaloid 7DLGT low borderline
Potra000853g06909.1 Alkaloid 7DLGT low borderline
Potra000857g06938.1 Alkaloid 7DLGT medium pass
Potra000857g06938.2 Alkaloid 7DLGT medium pass
Potra000887g07160.1 Alkaloid 7DLGT medium pass
Potra000887g07161.1 Alkaloid 7DLGT low borderline
Potra000948g07769.1 Alkaloid 7DLGT low borderline
Potra000963g07916.1 Alkaloid 7DLGT low borderline
Potra000963g07916.2 Alkaloid 7DLGT low borderline
Potra000963g07916.3 Alkaloid 7DLGT low borderline
Potra000963g07916.4 Alkaloid 7DLGT low borderline
Potra000975g08081.1 Alkaloid 7DLGT low borderline
Potra001008g08387.1 Alkaloid 7DLGT low borderline
Potra001020g08514.1 Alkaloid 7DLGT low borderline
Potra001020g08523.1 Alkaloid 7DLGT medium pass
Potra001020g08523.2 Alkaloid 7DLGT medium pass