PlantSME Plant secondary metabolism enzyme database

Populus tremula (populus_tremula)

Imported from atlas release summary for Populus tremula.

3319
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.93% Alkaloid pathway 23.83% Phenylpropanoid pathway 21.42% Flavonoid pathway 10.09% Steroid pathway 9.4% Rosmarinic acid pathway 7.32%
Family Distribution
BAHD 7.36% 4CL 5.32% POD 4.43% C4H 4.26% NMT 4.03% C3'H/CYP98A 4.03% IFS 3.28% F3H 2.92%
Other Families 64.36%
More Families (96)
UGT 211 2.84% CYP76 193 2.59% UFGT 188 2.53% 7DLGT 185 2.49% T3O 182 2.45% STR 175 2.35% CAD 172 2.31% DWF4/CYP90B1 151 2.03% SMT1/SMT2/SMT3 128 1.72% CAS 128 1.72% IFR 121 1.63% SGD 118 1.59% TRI/TRII 117 1.57% CODM/T6ODM 114 1.53% F3'H/CYP75B 104 1.4% H6H 100 1.34% LAC 97 1.3% GS 91 1.22% CYP71 88 1.18% ANR 87 1.17% BR6OX2/CYP85A2 86 1.16% IO 70 0.94% GES 67 0.9% CYP90D1 66 0.89% 8HGO 64 0.86% TPS 64 0.86% CSE 62 0.83% RAS 61 0.82% CCR 57 0.77% TAT 56 0.75% AACT 56 0.75% BBE 55 0.74% COMT 55 0.74% 16OMT 53 0.71% HCT 53 0.71% BR6OX1/CYP85A1 50 0.67% PYKS 49 0.66% FNS 47 0.63% PMT 43 0.58% T16H 39 0.52% G8O/G8H 36 0.48% CNMT 35 0.47% 7DLH 35 0.47% CPR 35 0.47% DFR 33 0.44% NCS 32 0.43% CPD/CYP90A1 32 0.43% COR 30 0.4% LAMT 29 0.39% F5H/CYP84A 29 0.39% SLS 28 0.38% ROT3/CYP90C1 25 0.34% F3'5'H/CYP75A 24 0.32% PAL 24 0.32% SQE 23 0.31% DXS 22 0.3% SQS/FDFT1 21 0.28% SMO1/SMO2 20 0.27% MVD 19 0.26% FPPS 18 0.24% MPO 17 0.23% MCT/IspD 17 0.23% TDC 16 0.22% CHS 16 0.22% GGPPS 16 0.22% CYP719 15 0.2% ANS/LDOX 15 0.2% CYP51G1 15 0.2% DET2 15 0.2% MVK 15 0.2% ISY 14 0.19% CMK/IspE 13 0.17% HMGR 13 0.17% HPPR 12 0.16% CYP80B1 11 0.15% DWF1 11 0.15% DWF5 10 0.13% CCoAOMT 9 0.12% DXR 9 0.12% TYDC_DDC 8 0.11% CHI 8 0.11% DWF7 8 0.11% CPI1 7 0.09% HDR/IspH 7 0.09% FK 6 0.08% XMT_MXMT_DXMT 5 0.07% MDS/IspF 5 0.07% HYD1 4 0.05% HMGS 4 0.05% 6OMT_4OMT_SOMT 3 0.04% HDS/IspG 3 0.04% CYP80F1 2 0.03% ODC 2 0.03% ADC 2 0.03% IDI 2 0.03% PMK 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 927 20 BAHD (456) View species results
Alkaloid pathway 791 24 NMT (188) View species results
Phenylpropanoid pathway 711 13 POD (308) View species results
Flavonoid pathway 335 11 UFGT (164) View species results
Steroid pathway 312 13 CAS (122) View species results
Rosmarinic acid pathway 243 7 4CL (80) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2142 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 662 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ISY
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Gene Pathway Family Confidence Status
Potra000546g03888.1 Alkaloid ISY medium pass
Potra000729g05728.1 Alkaloid ISY medium pass
Potra000729g05729.1 Alkaloid ISY medium pass
Potra000729g05730.1 Alkaloid ISY medium pass
Potra000729g05731.1 Alkaloid ISY high pass
Potra000729g33252.1 Alkaloid ISY medium pass
Potra000740g05842.1 Alkaloid ISY low borderline
Potra002253g17310.1 Alkaloid ISY low borderline
Potra002454g18594.1 Alkaloid ISY medium pass
Potra003354g21429.1 Alkaloid ISY medium pass
Potra003354g21429.2 Alkaloid ISY medium pass
Potra179495g28020.1 Alkaloid ISY high pass
Potra179495g28020.2 Alkaloid ISY high pass
Potra191357g34264.1 Alkaloid ISY medium pass